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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307350 (39 seq.)
>W131099664
AOTL01000013
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
749969
749893
-
Ile
GAT
[ENA]
¡û
>W131099678
AOTL01000016
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
84958
84882
-
Ile
GAT
[ENA]
¡û
>W131099681
AOTL01000021
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
167899
167975
+
Ile
GAT
[ENA]
¡û
>W131163516
AQZU01000003
Gammaproteobacteria
Methylovulum miyakonense HT12 [AQZU]
1616000
1616076
+
Ile
GAT
[ENA]
¡û
>W131163519
AQZU01000003
Gammaproteobacteria
Methylovulum miyakonense HT12 [AQZU]
803928
803852
-
Ile
GAT
[ENA]
¡û
>W131163538
AQZU01000004
Gammaproteobacteria
Methylovulum miyakonense HT12 [AQZU]
276711
276787
+
Ile
GAT
[ENA]
¡û
>W131186018
ARVS01000003
Gammaproteobacteria
Methylobacter marinus A45 [ARVS]
463031
463107
+
Ile
GAT
[ENA]
¡û
>W131186025
ARVS01000004
Gammaproteobacteria
Methylobacter marinus A45 [ARVS]
36986
37062
+
Ile
GAT
[ENA]
¡û
>W131186028
ARVS01000004
Gammaproteobacteria
Methylobacter marinus A45 [ARVS]
378814
378890
+
Ile
GAT
[ENA]
¡û
>W131219226
ATYJ01000003
Gammaproteobacteria
Methylobacter luteus IMV-B-3098 [ATYJ]
1143021
1143097
+
Ile
GAT
[ENA]
¡û
>W131219233
ATYJ01000003
Gammaproteobacteria
Methylobacter luteus IMV-B-3098 [ATYJ]
1385174
1385250
+
Ile
GAT
[ENA]
¡û
>W131219238
ATYJ01000013
Gammaproteobacteria
Methylobacter luteus IMV-B-3098 [ATYJ]
66443
66519
+
Ile
GAT
[ENA]
¡û
>WENV180275012
OBHR01003953
[OBHR] metagenome; water
283
207
-
Ile
GAT
[ENA]
¢þ
>WENV180277106
OBHV01064333
[OBHV] metagenome; water
128
204
+
Ile
GAT
[ENA]
¢þ
>WENV180299369
OBJC01002642
[OBJC] metagenome; water
241
317
+
Ile
GAT
[ENA]
¢þ
>WENV183671881
ORJL011112017
[ORJL] groundwater metagenome; groundwater
3668
3592
-
Ile
GAT
[ENA]
¢þ
>WENV170005802
AMFO01002858
[AMFO] microbial mat metagenome; iron biomat sample collected via suction sampling at the Lo'ihi Seamount, Hawai'i, in about
93
17
-
Ile
GAT
[ENA]
¢þ
>WENV170623761
FUWD013170603
[FUWD] metagenome; unknown
426
502
+
Ile
GAT
[ENA]
¢þ
>WENV170632036
FUWD013377674
[FUWD] metagenome; unknown
426
502
+
Ile
GAT
[ENA]
¢þ
>C181059029
CP022129
Gammaproteobacteria
Methylovulum psychrotolerans HV10_M2 [CP022129]
4771960
4771884
-
Ile
GAT
-
¡û
>C191027175
CP024202
Gammaproteobacteria
Methylomicrobium sp. wino1 [CP024202]
1625715
1625791
+
Ile
GAT
-
¡û
>C191027205
CP024202
Gammaproteobacteria
Methylomicrobium sp. wino1 [CP024202]
782011
781935
-
Ile
GAT
-
¡û
>C191027207
CP024202
Gammaproteobacteria
Methylomicrobium sp. wino1 [CP024202]
378250
378174
-
Ile
GAT
-
¡û
>C191143411
CP035467
Gammaproteobacteria
Methylotuvimicrobium buryatense 5GB1C [CP035467]
131272
131348
+
Ile
GAT
-
¡û
>C191143414
CP035467
Gammaproteobacteria
Methylotuvimicrobium buryatense 5GB1C [CP035467]
590143
590219
+
Ile
GAT
-
¡û
>C191143438
CP035467
Gammaproteobacteria
Methylotuvimicrobium buryatense 5GB1C [CP035467]
4211752
4211676
-
Ile
GAT
-
¡û
>W141807543
JPON01000001
Gammaproteobacteria
Methylomarinum vadi [JPON]
2907686
2907762
+
Ile
GAT
[ENA]
¡û
>W141807547
JPON01000001
Gammaproteobacteria
Methylomarinum vadi [JPON]
3172293
3172369
+
Ile
GAT
[ENA]
¡û
>W141807572
JPON01000001
Gammaproteobacteria
Methylomarinum vadi [JPON]
1779355
1779279
-
Ile
GAT
[ENA]
¡û
>W141821685
JQNS01000001
Gammaproteobacteria
Methylobacter whittenburyi [JQNS]
249973
249897
-
Ile
GAT
[ENA]
¡û
>W141821693
JQNS01000002
Gammaproteobacteria
Methylobacter whittenburyi [JQNS]
347145
347221
+
Ile
GAT
[ENA]
¡û
>W141821717
JQNS01000006
Gammaproteobacteria
Methylobacter whittenburyi [JQNS]
2897
2821
-
Ile
GAT
[ENA]
¡û
>W141821722
JQNS01000007
Gammaproteobacteria
Methylobacter whittenburyi [JQNS]
1626383
1626307
-
Ile
GAT
[ENA]
¡û
>W1810090380
PGFZ01000001
Gammaproteobacteria
Methylovulum psychrotolerans Sph1 [PGFZ]
694427
694351
-
Ile
GAT
[ENA]
¡û
>W1810090391
PGFZ01000003
Gammaproteobacteria
Methylovulum psychrotolerans Sph1 [PGFZ]
190952
191028
+
Ile
GAT
[ENA]
¡û
>C151097983
FO082060
Gammaproteobacteria
Methylotuvimicrobium alcaliphilum 20Z [FO082060]
126028
126104
+
Ile
GAT
[Ensembl]
¡û
>C151097985
FO082060
Gammaproteobacteria
Methylotuvimicrobium alcaliphilum 20Z [FO082060]
620271
620347
+
Ile
GAT
[Ensembl]
¡û
>C151098001
FO082060
Gammaproteobacteria
Methylotuvimicrobium alcaliphilum 20Z [FO082060]
4083335
4083259
-
Ile
GAT
[Ensembl]
¡û
>ENV002491
AY934138
Environmental sample from ENV division of INSDC
78
156
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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