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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307388 (67 seq.)
>W1710996769
LQBR01000008
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
48164
48239
+
Gly
GCC
[ENA]
¡û
>W1710996771
LQBR01000008
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
48474
48549
+
Gly
GCC
[ENA]
¡û
>WENV180080488
MPMC02021170
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
692
767
+
Gly
GCC
[ENA]
¡û
>WENV180100796
OAOS01042419
[OAOS] marine metagenome; ENVO.00002110
22
97
+
Gly
GCC
[ENA]
¡û
>WENV180102152
OAOX01064444
[OAOX] marine metagenome; l
201
276
+
Gly
GCC
[ENA]
¡û
>WENV180309436
OBJS01001156
[OBJS] beach sand metagenome; beach sand
76
151
+
Gly
GCC
[ENA]
¡û
>WENV180360452
OBNU01000002
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
22721
22796
+
Gly
GCC
[ENA]
¡û
>WENV180362587
OBNX01007824
[OBNX] marine metagenome; ENVO:00002010
713
638
-
Gly
GCC
[ENA]
¡û
>WENV180394814
OBPS01092186
[OBPS] marine metagenome; ENVO:00002010 seawater
82
157
+
Gly
GCC
[ENA]
¡û
>WENV181122608
OEFM01068196
[OEFM] marine metagenome; ENVO:00000569 for seawater
19
94
+
Gly
GCC
[ENA]
¡û
>WENV181325722
OFLJ01017878
[OFLJ] seawater metagenome; seawater
801
726
-
Gly
GCC
[ENA]
¡û
>WENV181385692
OFRJ01007710
[OFRJ] marine metagenome; seawater
213
288
+
Gly
GCC
[ENA]
¡û
>WENV181391556
OFRT01021502
[OFRT] seawater metagenome; seawater
34
109
+
Gly
GCC
[ENA]
¡û
>WENV181392140
OFRW01004257
[OFRW] seawater metagenome; seawater
328
403
+
Gly
GCC
[ENA]
¡û
>WENV170174008
CEOQ01262051
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
769
844
+
Gly
GCC
[ENA]
¡û
>WENV170232056
CEQI01019331
[CEQI] marine metagenome genome assembly TARA_076_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
161
86
-
Gly
GCC
[ENA]
¡û
>WENV170771564
LXNI01002037
[LXNI] sponge metagenome; marine sponge reef
14993
14918
-
Gly
GCC
[ENA]
¡û
>WENV170958607
MKWU01001472
[MKWU] sponge metagenome;
14380
14305
-
Gly
GCC
[ENA]
¡û
>WENV170963360
MRWG01000132
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
5238
5163
-
Gly
GCC
[ENA]
¡û
>W09118449
ACCX01000014
Gammaproteobacteria
gamma proteobacterium NOR5-3 [ACCX]
89566
89491
-
Gly
GCC
[ENA]
¡û
>W1810270716
PREV01000027
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
789455
789530
+
Gly
GCC
[ENA]
¡û
>W1810270718
PREV01000027
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
789776
789851
+
Gly
GCC
[ENA]
¡û
>SRA1008526
SRR020490.408188
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
108
183
+
Gly
GCC
[SRA]
>W2010314720
CACDRF010000067
Gammaproteobacteria
BD1-7 clade bacterium [CACDRF]
958
883
-
Gly
GCC
[ENA]
¡û
>W2010318840
CACSIL010000002
Gammaproteobacteria
Halioglobus japonicus [CACSIL]
245364
245289
-
Gly
GCC
[ENA]
¡û
>W2010318859
CACSIL010000045
Gammaproteobacteria
Halioglobus japonicus [CACSIL]
363977
363902
-
Gly
GCC
[ENA]
¡û
>W2010318947
CACSIN010000023
Gammaproteobacteria
BD1-7 clade bacterium [CACSIN]
87049
86974
-
Gly
GCC
[ENA]
¡û
>W2010318952
CACSIN010000025
Gammaproteobacteria
BD1-7 clade bacterium [CACSIN]
177736
177661
-
Gly
GCC
[ENA]
¡û
>W2010318980
CACSIO010000001
Gammaproteobacteria
BD1-7 clade bacterium [CACSIO]
693489
693564
+
Gly
GCC
[ENA]
¡û
>W2010319006
CACSIO010000012
Gammaproteobacteria
BD1-7 clade bacterium [CACSIO]
274833
274908
+
Gly
GCC
[ENA]
¡û
>SRA1050754
SRR035096.15620
454 Sequencing (SRP001817)
363
288
-
Gly
GCC
[SRA]
>W2110293599
JACZCR010000040
Gammaproteobacteria
Microbulbifer hainanensis NBU-8HK146 [JACZCR]
5408
5483
+
Gly
GCC
[ENA]
¡û
>W2110293601
JACZCR010000040
Gammaproteobacteria
Microbulbifer hainanensis NBU-8HK146 [JACZCR]
5727
5802
+
Gly
GCC
[ENA]
¡û
>W2110295191
JACZFR010000046
Gammaproteobacteria
Microbulbifer taiwanensis LMG 26125 [JACZFR]
4215
4290
+
Gly
GCC
[ENA]
¡û
>W2110295193
JACZFR010000046
Gammaproteobacteria
Microbulbifer taiwanensis LMG 26125 [JACZFR]
4545
4620
+
Gly
GCC
[ENA]
¡û
>W2110445173
JAERQK010000001
Gammaproteobacteria
Motiliproteus sediminis HS6 [JAERQK]
555167
555242
+
Gly
GCC
[ENA]
¡û
>W2110445176
JAERQK010000001
Gammaproteobacteria
Motiliproteus sediminis HS6 [JAERQK]
555526
555601
+
Gly
GCC
[ENA]
¡û
>W2110445223
JAERQK010000014
Gammaproteobacteria
Motiliproteus sediminis HS6 [JAERQK]
35546
35621
+
Gly
GCC
[ENA]
¡û
>W2110445225
JAERQK010000014
Gammaproteobacteria
Motiliproteus sediminis HS6 [JAERQK]
35718
35793
+
Gly
GCC
[ENA]
¡û
>W2110655574
JAHVKO010000001
Gammaproteobacteria
Microbulbifer agarilyticus DP4N21-6 [JAHVKO]
296393
296468
+
Gly
GCC
[ENA]
¡û
>W2110655576
JAHVKO010000001
Gammaproteobacteria
Microbulbifer agarilyticus DP4N21-6 [JAHVKO]
296687
296762
+
Gly
GCC
[ENA]
¡û
>W2110683900
JAILYN010000003
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
111928
112003
+
Gly
GCC
[ENA]
¡û
>W2110683902
JAILYN010000003
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
112394
112469
+
Gly
GCC
[ENA]
¡û
>W2110683904
JAILYN010000003
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
112628
112703
+
Gly
GCC
[ENA]
¡û
>W2110683932
JAILYN010000021
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
75504
75579
+
Gly
GCC
[ENA]
¡û
>W2110683935
JAILYN010000021
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
75827
75902
+
Gly
GCC
[ENA]
¡û
>W2110683939
JAILYN010000032
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
16647
16722
+
Gly
GCC
[ENA]
¡û
>W2110700758
JAIUZG010000004
Gammaproteobacteria
Microbulbifer agarilyticus DP5N0-1 [JAIUZG]
267887
267812
-
Gly
GCC
[ENA]
¡û
>W2110700760
JAIUZG010000004
Gammaproteobacteria
Microbulbifer agarilyticus DP5N0-1 [JAIUZG]
267593
267518
-
Gly
GCC
[ENA]
¡û
>C211223554
CP066167
Gammaproteobacteria
Spongiibacter sp. CSC3.9 csc3.9 [CP066167]
1864692
1864767
+
Gly
GCC
-
¡û
>C211223557
CP066167
Gammaproteobacteria
Spongiibacter sp. CSC3.9 csc3.9 [CP066167]
2154770
2154845
+
Gly
GCC
-
¡û
>C231254149
CP088953
Gammaproteobacteria
Microbulbifer elongatus DSM 6810 [CP088953]
2354960
2355035
+
Gly
GCC
-
¡û
>C231254151
CP088953
Gammaproteobacteria
Microbulbifer elongatus DSM 6810 [CP088953]
2355256
2355331
+
Gly
GCC
-
¡û
>C231316271
CP092418
Gammaproteobacteria
Microbulbifer variabilis SCSIO 43006 [CP092418]
1625961
1626036
+
Gly
GCC
-
¡û
>C231316273
CP092418
Gammaproteobacteria
Microbulbifer variabilis SCSIO 43006 [CP092418]
1626265
1626340
+
Gly
GCC
-
¡û
>C231316275
CP092418
Gammaproteobacteria
Microbulbifer variabilis SCSIO 43006 [CP092418]
1626570
1626645
+
Gly
GCC
-
¡û
>C241121036
CP047569
Gammaproteobacteria
Microbulbifer sp. ALW1 [CP047569]
2407698
2407773
+
Gly
GCC
-
¡û
>C241121038
CP047569
Gammaproteobacteria
Microbulbifer sp. ALW1 [CP047569]
2407994
2408069
+
Gly
GCC
-
¡û
>C241234553
CP118605
Gammaproteobacteria
Microbulbifer bruguierae H12 [CP118605]
927214
927139
-
Gly
GCC
-
¡û
>C241234555
CP118605
Gammaproteobacteria
Microbulbifer bruguierae H12 [CP118605]
926917
926842
-
Gly
GCC
-
¡û
>C241282010
CP128433
Gammaproteobacteria
Microbulbifer sp. MKSA007 [CP128433]
1868026
1868101
+
Gly
GCC
-
¡û
>C241282012
CP128433
Gammaproteobacteria
Microbulbifer sp. MKSA007 [CP128433]
1868329
1868404
+
Gly
GCC
-
¡û
>C241282014
CP128433
Gammaproteobacteria
Microbulbifer sp. MKSA007 [CP128433]
1868632
1868707
+
Gly
GCC
-
¡û
>C241282016
CP128433
Gammaproteobacteria
Microbulbifer sp. MKSA007 [CP128433]
1868935
1869010
+
Gly
GCC
-
¡û
>C241293272
CP130317
Gammaproteobacteria
Microbulbifer thermotolerans HB226069 [CP130317]
2332170
2332095
-
Gly
GCC
-
¡û
>W1710520079
FNFH01000003
Gammaproteobacteria
Microbulbifer yueqingensis [FNFH]
710186
710111
-
Gly
GCC
[ENA]
¡û
>W1710520081
FNFH01000003
Gammaproteobacteria
Microbulbifer yueqingensis [FNFH]
709877
709802
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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