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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307408 (95 seq.)
>W1710894111
LNFK01000049
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
84
8
-
Pro
GGG
[ENA]
¡û
>W1711073267
LSIJ01000064
Alphaproteobacteria
Sphingomonas sp. CCH10-B3 [LSIJ]
65186
65110
-
Pro
GGG
[ENA]
¡û
>W1711075269
LSKG01000114
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
2819
2743
-
Pro
GGG
[ENA]
¡û
>W1711075346
LSKI01000094
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
13382
13458
+
Pro
GGG
[ENA]
¡û
>W1711075626
LSKO01002222
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
10136
10212
+
Pro
GGG
[ENA]
¡û
>W1711125689
LUNP01000005
Alphaproteobacteria
Erythrobacter sp. REDSEA-S22_B4 [LUNP]
752265
752341
+
Pro
GGG
[ENA]
¡û
>W1711125739
LUNQ01000003
Alphaproteobacteria
Erythrobacter sp. REDSEA-S28_B2 [LUNQ]
262342
262266
-
Pro
GGG
[ENA]
¡û
>W1711125792
LUNR01000007
Alphaproteobacteria
Erythrobacter sp. REDSEA-S34_B3 [LUNR]
262383
262307
-
Pro
GGG
[ENA]
¡û
>W1711125809
LUNS01000035
Alphaproteobacteria
Erythrobacter sp. REDSEA-S36_B6 [LUNS]
10479
10403
-
Pro
GGG
[ENA]
¡û
>W1711125872
LUNT01000070
Alphaproteobacteria
Erythrobacter sp. REDSEA-S37_B3 [LUNT]
22716
22640
-
Pro
GGG
[ENA]
¡û
>W1711125909
LUNU01000003
Alphaproteobacteria
Erythrobacter sp. REDSEA-S40_B1 [LUNU]
262464
262388
-
Pro
GGG
[ENA]
¡û
>W1711125952
LUNV01000021
Alphaproteobacteria
Erythrobacter sp. REDSEA-S41_B1 [LUNV]
14354
14430
+
Pro
GGG
[ENA]
¡û
>W1711125982
LUNW01000004
Alphaproteobacteria
Erythrobacter sp. REDSEA-S42_B5 [LUNW]
261794
261718
-
Pro
GGG
[ENA]
¡û
>W1711126047
LUNX01000017
Alphaproteobacteria
Erythrobacter sp. REDSEA-S43_B2 [LUNX]
169252
169176
-
Pro
GGG
[ENA]
¡û
>W1711176186
LWFF01000274
Alphaproteobacteria
Erythrobacter sp. HI0063 [LWFF]
3008
3084
+
Pro
GGG
[ENA]
¡û
>W1711385230
MEDW01000070
Alphaproteobacteria
Erythrobacter sp. SCN 62-14 [MEDW]
1251
1327
+
Pro
GGG
[ENA]
¡û
>WENV180390997
OBPM01000749
[OBPM] marine metagenome; ENVO:00002010
2720
2796
+
Pro
GGG
[ENA]
¡û
>WENV180594079
OCOY01028491
[OCOY] marine metagenome; ENVO:00002010
267
343
+
Pro
GGG
[ENA]
¡û
>WENV181226687
OFDN01000006
[OFDN] hot springs metagenome; Water
259722
259798
+
Pro
GGG
[ENA]
¡û
>WENV181385084
OFRI01032137
[OFRI] wastewater metagenome; Exp Tend VB 90WW
853
777
-
Pro
GGG
[ENA]
¡û
>WENV183725943
PJQF01042822
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
359
283
-
Pro
GGG
[ENA]
¡û
>WENV183731468
PJTT01000006
[PJTT] soil metagenome; Soil (2) enriched on wood chips
633472
633396
-
Pro
GGG
[ENA]
¡û
>WENV183748232
PPFU01020833
[PPFU] hypolithon metagenome; Antarctic Hypolithon
6552
6476
-
Pro
GGG
[ENA]
¡û
>WENV170009614
APMI01000906
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
63808
63732
-
Pro
GGG
[ENA]
¡û
>WENV170555363
CXWL01000344
[CXWL] groundwater metagenome; biofilm material
24338
24414
+
Pro
GGG
[ENA]
¡û
>WENV170555717
CXWL01001939
[CXWL] groundwater metagenome; biofilm material
64842
64766
-
Pro
GGG
[ENA]
¡û
>WENV170556497
CXWL01009555
[CXWL] groundwater metagenome; biofilm material
35198
35274
+
Pro
GGG
[ENA]
¡û
>WENV170574440
FLYM01038518
[FLYM] hot springs metagenome; Sediment
5852
5928
+
Pro
GGG
[ENA]
¡û
>WENV170576193
FRDC01000061
[FRDC] freshwater metagenome; water
50552
50476
-
Pro
GGG
[ENA]
¡û
>WENV170576375
FRDC01000491
[FRDC] freshwater metagenome; water
10128
10204
+
Pro
GGG
[ENA]
¡û
>WENV170576780
FRDC01001746
[FRDC] freshwater metagenome; water
2059
1983
-
Pro
GGG
[ENA]
¡û
>WENV170578039
FSSH01007034
[FSSH] freshwater metagenome; drinking water
78
2
-
Pro
GGG
[ENA]
¡û
>WENV170710666
LNFM01002350
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
44380
44456
+
Pro
GGG
[ENA]
¡û
>WENV170727326
LULE01000001
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
262464
262388
-
Pro
GGG
[ENA]
¡û
>WENV170728712
LULF01000245
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
15133
15057
-
Pro
GGG
[ENA]
¡û
>WENV170730492
LULH01000072
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
22716
22640
-
Pro
GGG
[ENA]
¡û
>WENV170731553
LULI01000925
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
10479
10403
-
Pro
GGG
[ENA]
¡û
>WENV170732774
LULJ01000982
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
263
339
+
Pro
GGG
[ENA]
¡û
>WENV170733675
LULK01000001
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
262383
262307
-
Pro
GGG
[ENA]
¡û
>WENV170737144
LULN01003582
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
1643
1567
-
Pro
GGG
[ENA]
¡û
>WENV170737389
LULO01000016
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
55265
55341
+
Pro
GGG
[ENA]
¡û
>WENV170739082
LULP01020335
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
109
185
+
Pro
GGG
[ENA]
¡û
>WENV170739204
LULQ01000001
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
262342
262266
-
Pro
GGG
[ENA]
¡û
>WENV170743384
LULW01000001
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
752265
752341
+
Pro
GGG
[ENA]
¡û
>WENV170758790
LUMS01000001
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
14354
14430
+
Pro
GGG
[ENA]
¡û
>WENV170759550
LUMT01000006
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
261794
261718
-
Pro
GGG
[ENA]
¡û
>WENV170760717
LUMU01000005
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
169252
169176
-
Pro
GGG
[ENA]
¡û
>WENV170761559
LUMV01001468
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
2301
2225
-
Pro
GGG
[ENA]
¡û
>WENV170762557
LUMW01014610
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
746
822
+
Pro
GGG
[ENA]
¡û
>WENV170762649
LUMW01021697
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
795
719
-
Pro
GGG
[ENA]
¡û
>W1910727963
MGVU01000463
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
3853
3777
-
Pro
GGG
[ENA]
¡û
>W1911398096
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
863561
863637
+
Pro
GGG
[ENA]
¡û
>W1911688176
QLJH01000025
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt15_0812 [QLJH]
30893
30817
-
Pro
GGG
[ENA]
¡û
>W1911767912
QXFK01000015
Alphaproteobacteria
Altererythrobacter sp. Ery1 [QXFK]
196513
196589
+
Pro
GGG
[ENA]
¡û
>W2010311896
CABWNA010000001
Alphaproteobacteria
Sphingomonas sp. AX6 [CABWNA]
32512
32436
-
Pro
GGG
[ENA]
¡û
>W2010523104
JAANOZ010000002
Alphaproteobacteria
Altererythrobacter sp. YJ20 [JAANOZ]
245848
245924
+
Pro
GGG
[ENA]
¡û
>W2010711883
JACHNY010000001
Alphaproteobacteria
Sphingomonas abaci DSM 15867 [JACHNY]
536900
536824
-
Pro
GGG
[ENA]
¡û
>W2010725295
JACIEA010000001
Alphaproteobacteria
Sphingorhabdus rigui DSM 29050 [JACIEA]
1574778
1574854
+
Pro
GGG
[ENA]
¡û
>W2010731821
JACIJJ010000001
Alphaproteobacteria
Sphingomonas yantingensis DSM 27244 [JACIJJ]
1110328
1110252
-
Pro
GGG
[ENA]
¡û
>W2010861391
MGVU01000463
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
3853
3777
-
Pro
GGG
[ENA]
¡û
>W2011134904
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
863561
863637
+
Pro
GGG
[ENA]
¡û
>W2011269605
QLJH01000025
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt15_0812 [QLJH]
30893
30817
-
Pro
GGG
[ENA]
¡û
>W2011325434
QXFK01000015
Alphaproteobacteria
Altererythrobacter sp. Ery1 [QXFK]
196513
196589
+
Pro
GGG
[ENA]
¡û
>W2011352140
RAGX01000003
Alphaproteobacteria
Sphingomonadaceae bacterium KCTC 52944 [RAGX]
1700116
1700040
-
Pro
GGG
[ENA]
¡û
>W2011455005
RKSN01000001
Alphaproteobacteria
Chakrabartia godavariana PRB40 [RKSN]
650353
650277
-
Pro
GGG
[ENA]
¡û
>W2011493857
RWJI01000001
Alphaproteobacteria
Sphingorhabdus wooponensis 03SU3-P [RWJI]
553546
553470
-
Pro
GGG
[ENA]
¡û
>W2011553224
SDWJ01000001
Alphaproteobacteria
Sphingorhabdus profundilacus IMCC26285 [SDWJ]
1509142
1509218
+
Pro
GGG
[ENA]
¡û
>W2012071353
VKKU01000001
Alphaproteobacteria
Sphingorhabdus contaminans KCTC32445 [VKKU]
269108
269032
-
Pro
GGG
[ENA]
¡û
>W2012438678
WTYD01000001
Alphaproteobacteria
Erythrobacter pelagi JCM 17468 [WTYD]
1398488
1398564
+
Pro
GGG
[ENA]
¡û
>W2012439030
WTYK01000003
Alphaproteobacteria
Altererythrobacter soli MCCC 1K02066 [WTYK]
53338
53262
-
Pro
GGG
[ENA]
¡û
>W2012439121
WTYM01000035
Alphaproteobacteria
Altererythrobacter salegens MCCC 1K01500 [WTYM]
62290
62366
+
Pro
GGG
[ENA]
¡û
>W2012439538
WTYV01000005
Alphaproteobacteria
Altererythrobacter buctensis M0322 [WTYV]
163061
163137
+
Pro
GGG
[ENA]
¡û
>W2110547220
JAGHQR010000002
Alphaproteobacteria
Erythrobacter sp. A6_0 [JAGHQR]
6364
6440
+
Pro
GGG
[ENA]
¡û
>C201257435
CP053015
Alphaproteobacteria
Sphingomonas sp. CSW-10 [CP053015]
2354793
2354717
-
Pro
GGG
-
¡û
>C211134403
CP060494
Alphaproteobacteria
Sphingosinithalassobacter sp. CS137 [CP060494]
2824227
2824151
-
Pro
GGG
-
¡û
>C211376188
CP080327
Alphaproteobacteria
Aquisediminimonas profunda DS48-3 [CP080327]
325341
325417
+
Pro
GGG
-
¡û
>C231317774
CP092471
Alphaproteobacteria
Qipengyuania sp. PHS-Z21 [CP092471]
1937493
1937417
-
Pro
GGG
-
¡û
>C231375849
CP096972
Alphaproteobacteria
Sphingomonas sp. SUN039 [CP096972]
165315
165391
+
Pro
GGG
-
¡û
>W1610754377
LNFK01000049
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
84
8
-
Pro
GGG
[ENA]
¡û
>W1610912572
LSIJ01000064
Alphaproteobacteria
Sphingomonas sp. CCH10-B3 [LSIJ]
65186
65110
-
Pro
GGG
[ENA]
¡û
>W1610914574
LSKG01000114
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
2819
2743
-
Pro
GGG
[ENA]
¡û
>W1610914651
LSKI01000094
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
13382
13458
+
Pro
GGG
[ENA]
¡û
>W1610914931
LSKO01002222
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
10136
10212
+
Pro
GGG
[ENA]
¡û
>W1610936622
LUNP01000005
Alphaproteobacteria
Erythrobacter sp. REDSEA-S22_B4 [LUNP]
752265
752341
+
Pro
GGG
[ENA]
¡û
>W1610936672
LUNQ01000003
Alphaproteobacteria
Erythrobacter sp. REDSEA-S28_B2 [LUNQ]
262342
262266
-
Pro
GGG
[ENA]
¡û
>W1610936725
LUNR01000007
Alphaproteobacteria
Erythrobacter sp. REDSEA-S34_B3 [LUNR]
262383
262307
-
Pro
GGG
[ENA]
¡û
>W1610936742
LUNS01000035
Alphaproteobacteria
Erythrobacter sp. REDSEA-S36_B6 [LUNS]
10479
10403
-
Pro
GGG
[ENA]
¡û
>W1610936805
LUNT01000070
Alphaproteobacteria
Erythrobacter sp. REDSEA-S37_B3 [LUNT]
22716
22640
-
Pro
GGG
[ENA]
¡û
>W1610936842
LUNU01000003
Alphaproteobacteria
Erythrobacter sp. REDSEA-S40_B1 [LUNU]
262464
262388
-
Pro
GGG
[ENA]
¡û
>W1610936885
LUNV01000021
Alphaproteobacteria
Erythrobacter sp. REDSEA-S41_B1 [LUNV]
14354
14430
+
Pro
GGG
[ENA]
¡û
>W1610936915
LUNW01000004
Alphaproteobacteria
Erythrobacter sp. REDSEA-S42_B5 [LUNW]
261794
261718
-
Pro
GGG
[ENA]
¡û
>W1610936980
LUNX01000017
Alphaproteobacteria
Erythrobacter sp. REDSEA-S43_B2 [LUNX]
169252
169176
-
Pro
GGG
[ENA]
¡û
>W1610984499
LWFF01000274
Alphaproteobacteria
Erythrobacter sp. HI0063 [LWFF]
3008
3084
+
Pro
GGG
[ENA]
¡û
>W1611004951
LXQM01000001
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
10245
10169
-
Pro
GGG
[ENA]
¡û
>W1710573606
FOXP01000005
Alphaproteobacteria
Sphingomonas rubra [FOXP]
69548
69472
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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