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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307571 (4 seq.)
>W1711792956
MWLG01000027
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum LMB bulk10D [MWLG]
8504
8577
+
Ala
TGC
[ENA]
¡û
>W141426880
JENA01000091
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum SH4 [JENA]
2766
2839
+
Ala
TGC
[ENA]
¡û
>WENV170960186
MKWU01018365
[MKWU] sponge metagenome;
3092
3019
-
Ala
TGC
[ENA]
¡û
>W1511524865
JYFQ01000001
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum 15L [JYFQ]
3093
3020
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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