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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307602 (99 seq.)
>C171032914
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
166795
166871
+
Met
CAT
-
¡û
>C171032920
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
792920
792996
+
Met
CAT
-
¡û
>C171032947
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
2332786
2332710
-
Met
CAT
-
¡û
>C171032950
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
2282967
2282891
-
Met
CAT
-
¡û
>C171032959
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
1548423
1548347
-
Met
CAT
-
¡û
>WENV180017414
FSWX01000158
[FSWX] metagenome; soil
3365
3442
+
fMet
CAT
[ENA]
¡û
>W141226093
BAJT01000033
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
89
13
-
Met
CAT
[ENA]
¡û
>WENV170669551
LAHS01000534
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
658
734
+
Met
CAT
[ENA]
¡û
>C191090652
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
1862548
1862624
+
Met
CAT
-
¡û
>C191090656
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
1906842
1906918
+
Met
CAT
-
¡û
>C191090673
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
995453
995377
-
Met
CAT
-
¡û
>C191090676
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
986786
986710
-
Met
CAT
-
¡û
>C191090679
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
969977
969901
-
Met
CAT
-
¡û
>C191090693
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
150571
150495
-
Met
CAT
-
¡û
>W1911491953
OAOQ01000047
Alphaproteobacteria
Rhodobacter ovatus JA234 [OAOQ]
49
125
+
Met
CAT
[ENA]
¡û
>W1810000681
BEWM01000030
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
77
1
-
Met
CAT
[ENA]
¡û
>W2010100055
BJUZ01000006
Alphaproteobacteria
Gluconobacter wancherniae NBRC 103581 [BJUZ]
78
2
-
fMet
CAT
[ENA]
¡û
>W2011152904
OAOQ01000047
Alphaproteobacteria
Rhodobacter ovatus JA234 [OAOQ]
49
125
+
fMet
CAT
[ENA]
¡û
>W2012086297
VLTI01000011
Alphaproteobacteria
Acetobacter peroxydans ATCC 12874 [VLTI]
267
343
+
fMet
CAT
[ENA]
¡û
>W2012406763
WOSZ01000007
Alphaproteobacteria
Acetobacter peroxydans LMG 1635 [WOSZ]
151882
151806
-
fMet
CAT
[ENA]
¡û
>W2012406949
WOTD01000049
Alphaproteobacteria
Acetobacter lambici LMG 27439 [WOTD]
65
141
+
fMet
CAT
[ENA]
¡û
>W2012406950
WOTD01000052
Alphaproteobacteria
Acetobacter lambici LMG 27439 [WOTD]
35
111
+
fMet
CAT
[ENA]
¡û
>W2110172197
JABCQJ010000005
Alphaproteobacteria
Gluconobacter wancherniae LMG27016 [JABCQJ]
35
111
+
fMet
CAT
[ENA]
¡û
>W2110172204
JABCQJ010000006
Alphaproteobacteria
Gluconobacter wancherniae LMG27016 [JABCQJ]
5343
5419
+
fMet
CAT
[ENA]
¡û
>W2110172400
JABCQO010000001
Alphaproteobacteria
Gluconobacter cerevisiae LMG 27748 [JABCQO]
620896
620820
-
fMet
CAT
[ENA]
¡û
>W2110172439
JABCQO010000020
Alphaproteobacteria
Gluconobacter cerevisiae LMG 27748 [JABCQO]
35
111
+
fMet
CAT
[ENA]
¡û
>W2110172441
JABCQO010000023
Alphaproteobacteria
Gluconobacter cerevisiae LMG 27748 [JABCQO]
34
110
+
fMet
CAT
[ENA]
¡û
>W2110172444
JABCQO010000027
Alphaproteobacteria
Gluconobacter cerevisiae LMG 27748 [JABCQO]
77
1
-
fMet
CAT
[ENA]
¡û
>W2110172445
JABCQO010000037
Alphaproteobacteria
Gluconobacter cerevisiae LMG 27748 [JABCQO]
30
106
+
fMet
CAT
[ENA]
¡û
>W2110249510
JACRVT010000001
Alphaproteobacteria
Gluconobacter cerevisiae DSM 27644 [JACRVT]
465682
465606
-
fMet
CAT
[ENA]
¡û
>W2110249511
JACRVT010000001
Alphaproteobacteria
Gluconobacter cerevisiae DSM 27644 [JACRVT]
465437
465361
-
fMet
CAT
[ENA]
¡û
>W2110249550
JACRVT010000021
Alphaproteobacteria
Gluconobacter cerevisiae DSM 27644 [JACRVT]
172
248
+
fMet
CAT
[ENA]
¡û
>W2110249552
JACRVT010000023
Alphaproteobacteria
Gluconobacter cerevisiae DSM 27644 [JACRVT]
12742
12666
-
fMet
CAT
[ENA]
¡û
>W2110249553
JACRVT010000041
Alphaproteobacteria
Gluconobacter cerevisiae DSM 27644 [JACRVT]
168
244
+
fMet
CAT
[ENA]
¡û
>W2110249765
JACRVY010000002
Alphaproteobacteria
Gluconobacter cerinus DSM 7148 [JACRVY]
705830
705754
-
fMet
CAT
[ENA]
¡û
>W2110249779
JACRVY010000004
Alphaproteobacteria
Gluconobacter cerinus DSM 7148 [JACRVY]
82746
82822
+
fMet
CAT
[ENA]
¡û
>W2110249796
JACRVY010000007
Alphaproteobacteria
Gluconobacter cerinus DSM 7148 [JACRVY]
76
152
+
fMet
CAT
[ENA]
¡û
>W2110249807
JACRVY010000013
Alphaproteobacteria
Gluconobacter cerinus DSM 7148 [JACRVY]
6318
6242
-
fMet
CAT
[ENA]
¡û
>W2110249808
JACRVY010000034
Alphaproteobacteria
Gluconobacter cerinus DSM 7148 [JACRVY]
76
152
+
fMet
CAT
[ENA]
¡û
>W2110249810
JACRVZ010000001
Alphaproteobacteria
Gluconobacter sp. P5E10 [JACRVZ]
164
240
+
fMet
CAT
[ENA]
¡û
>W2110249836
JACRVZ010000003
Alphaproteobacteria
Gluconobacter sp. P5E10 [JACRVZ]
512144
512068
-
fMet
CAT
[ENA]
¡û
>W2110249858
JACRVZ010000025
Alphaproteobacteria
Gluconobacter sp. P5E10 [JACRVZ]
265
341
+
fMet
CAT
[ENA]
¡û
>W2110249859
JACRVZ010000030
Alphaproteobacteria
Gluconobacter sp. P5E10 [JACRVZ]
173
249
+
fMet
CAT
[ENA]
¡û
>W2110249866
JACRWA010000001
Alphaproteobacteria
Gluconobacter sp. P5E12 [JACRWA]
889089
889013
-
fMet
CAT
[ENA]
¡û
>W2110249905
JACRWA010000016
Alphaproteobacteria
Gluconobacter sp. P5E12 [JACRWA]
30522
30446
-
fMet
CAT
[ENA]
¡û
>W2110249908
JACRWA010000036
Alphaproteobacteria
Gluconobacter sp. P5E12 [JACRWA]
210
286
+
fMet
CAT
[ENA]
¡û
>W2110249909
JACRWA010000045
Alphaproteobacteria
Gluconobacter sp. P5E12 [JACRWA]
118
194
+
fMet
CAT
[ENA]
¡û
>W2110443059
JAERLC010000020
Alphaproteobacteria
Gluconobacter cerinus Dm-3 [JAERLC]
40737
40661
-
fMet
CAT
[ENA]
¡û
>W2110443061
JAERLC010000042
Alphaproteobacteria
Gluconobacter cerinus Dm-3 [JAERLC]
1
77
+
fMet
CAT
[ENA]
¡û
>W2110443064
JAERLC010000048
Alphaproteobacteria
Gluconobacter cerinus Dm-3 [JAERLC]
77
1
-
fMet
CAT
[ENA]
¡û
>W2110443072
JAERLD010000001
Alphaproteobacteria
Gluconobacter cerinus Dm-75 [JAERLD]
574691
574767
+
fMet
CAT
[ENA]
¡û
>W2110443097
JAERLD010000006
Alphaproteobacteria
Gluconobacter cerinus Dm-75 [JAERLD]
1
77
+
fMet
CAT
[ENA]
¡û
>W2110443112
JAERLD010000021
Alphaproteobacteria
Gluconobacter cerinus Dm-75 [JAERLD]
1
77
+
fMet
CAT
[ENA]
¡û
>W2110443128
JAERLE010000002
Alphaproteobacteria
Gluconobacter cerinus Dm-76 [JAERLE]
78
2
-
fMet
CAT
[ENA]
¡û
>W2110443206
JAERLF010000016
Alphaproteobacteria
Gluconobacter cerinus Dm-77 [JAERLF]
77
1
-
fMet
CAT
[ENA]
¡û
>W2110443207
JAERLF010000023
Alphaproteobacteria
Gluconobacter cerinus Dm-77 [JAERLF]
1
77
+
fMet
CAT
[ENA]
¡û
>W2110443226
JAERLG010000003
Alphaproteobacteria
Gluconobacter cerinus Dm-69 [JAERLG]
1
77
+
fMet
CAT
[ENA]
¡û
>W2110443244
JAERLG010000006
Alphaproteobacteria
Gluconobacter cerinus Dm-69 [JAERLG]
1
77
+
fMet
CAT
[ENA]
¡û
>W2110443256
JAERLG010000015
Alphaproteobacteria
Gluconobacter cerinus Dm-69 [JAERLG]
77
1
-
fMet
CAT
[ENA]
¡û
>W2110443319
JAERLI010000008
Alphaproteobacteria
Gluconobacter cerinus Dm-13 [JAERLI]
9538
9462
-
fMet
CAT
[ENA]
¡û
>W2110443386
JAERLJ010000007
Alphaproteobacteria
Gluconobacter cerinus Dm-45 [JAERLJ]
137367
137291
-
fMet
CAT
[ENA]
¡û
>W2110443479
JAERLL010000006
Alphaproteobacteria
Gluconobacter cerinus Dm-25 [JAERLL]
81346
81422
+
fMet
CAT
[ENA]
¡û
>W2110443491
JAERLL010000009
Alphaproteobacteria
Gluconobacter cerinus Dm-25 [JAERLL]
137453
137377
-
fMet
CAT
[ENA]
¡û
>W2110443497
JAERLL010000031
Alphaproteobacteria
Gluconobacter cerinus Dm-25 [JAERLL]
11166
11090
-
fMet
CAT
[ENA]
¡û
>W2110443509
JAERLM010000002
Alphaproteobacteria
Gluconobacter cerinus Dm-58 [JAERLM]
87
163
+
fMet
CAT
[ENA]
¡û
>W2110443520
JAERLM010000005
Alphaproteobacteria
Gluconobacter cerinus Dm-58 [JAERLM]
317911
317835
-
fMet
CAT
[ENA]
¡û
>W2110443536
JAERLM010000008
Alphaproteobacteria
Gluconobacter cerinus Dm-58 [JAERLM]
137048
136972
-
fMet
CAT
[ENA]
¡û
>W2110443554
JAERLN010000001
Alphaproteobacteria
Gluconobacter cerinus Dm-23 [JAERLN]
77
1
-
fMet
CAT
[ENA]
¡û
>W2110443563
JAERLN010000003
Alphaproteobacteria
Gluconobacter cerinus Dm-23 [JAERLN]
1
77
+
fMet
CAT
[ENA]
¡û
>W2110443581
JAERLN010000008
Alphaproteobacteria
Gluconobacter cerinus Dm-23 [JAERLN]
137520
137444
-
fMet
CAT
[ENA]
¡û
>W2110443624
JAERLO010000004
Alphaproteobacteria
Gluconobacter cerinus Dm-80 [JAERLO]
77
1
-
fMet
CAT
[ENA]
¡û
>W2110443642
JAERLO010000013
Alphaproteobacteria
Gluconobacter cerinus Dm-80 [JAERLO]
24486
24410
-
fMet
CAT
[ENA]
¡û
>W2110443643
JAERLO010000015
Alphaproteobacteria
Gluconobacter cerinus Dm-80 [JAERLO]
1
77
+
fMet
CAT
[ENA]
¡û
>W2110443971
JAERLW010000002
Alphaproteobacteria
Gluconobacter sp. Dm-73 [JAERLW]
1
77
+
fMet
CAT
[ENA]
¡û
>W2110443983
JAERLW010000003
Alphaproteobacteria
Gluconobacter sp. Dm-73 [JAERLW]
1
77
+
fMet
CAT
[ENA]
¡û
>W2110443991
JAERLW010000005
Alphaproteobacteria
Gluconobacter sp. Dm-73 [JAERLW]
241417
241341
-
fMet
CAT
[ENA]
¡û
>W2110444012
JAERLW010000015
Alphaproteobacteria
Gluconobacter sp. Dm-73 [JAERLW]
63089
63165
+
fMet
CAT
[ENA]
¡û
>W2110444301
JAERMD010000010
Alphaproteobacteria
Gluconobacter wancherniae Dm-17 [JAERMD]
156
80
-
fMet
CAT
[ENA]
¡û
>W2110444349
JAERME010000021
Alphaproteobacteria
Gluconobacter wancherniae Dm-19 [JAERME]
5419
5495
+
fMet
CAT
[ENA]
¡û
>W2110444367
JAERMF010000003
Alphaproteobacteria
Gluconobacter wancherniae Dm-15 [JAERMF]
72845
72921
+
fMet
CAT
[ENA]
¡û
>W2110567590
JAGRQH010000018
Alphaproteobacteria
Neokomagataea sp. TBRC 2177 [JAGRQH]
5139
5063
-
fMet
CAT
[ENA]
¡û
>W2110680668
JAIHLR010000197
Alphaproteobacteria
Komagataeibacter rhaeticus K15 [JAIHLR]
9005
8929
-
fMet
CAT
[ENA]
¡û
>C241071453
CP043043
Alphaproteobacteria
Gluconobacter thailandicus HD924 [CP043043]
1475294
1475370
+
fMet
CAT
-
¡û
>W2130027463
JAERLD010000022
Alphaproteobacteria
Gluconobacter cerinus Dm-75 [JAERLD]
819
743
-
fMet
CAT
[ENA]
¡û
>W2130027473
JAERLO010000005
Alphaproteobacteria
Gluconobacter cerinus Dm-80 [JAERLO]
1
77
+
fMet
CAT
[ENA]
¡û
>W2310007831
BAPK01000027
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BAPK]
151165
151089
-
fMet
CAT
[ENA]
¡û
>W2310008514
BAQB01000015
Alphaproteobacteria
Neokomagataea tanensis NBRC 106556 [BAQB]
78
2
-
fMet
CAT
[ENA]
¡û
>W2310008555
BAQC01000056
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BAQC]
3024
3100
+
fMet
CAT
[ENA]
¡û
>W2310009245
BAQV01000008
Alphaproteobacteria
Gluconobacter cerinus NRIC 0229 [BAQV]
5362
5438
+
fMet
CAT
[ENA]
¡û
>W2310009586
BARC01000010
Alphaproteobacteria
Gluconobacter wancherniae NBRC 103581 [BARC]
5343
5419
+
fMet
CAT
[ENA]
¡û
>C161095999
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
909636
909712
+
Met
CAT
-
¡û
>C161096004
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
1063363
1063439
+
Met
CAT
-
¡û
>C161096009
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
2036721
2036797
+
Met
CAT
-
¡û
>W1610076874
BCZB01000057
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
2712
2788
+
Met
CAT
[ENA]
¡û
>C131009965
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
3445788
3445712
-
Met
CAT
[Ensembl]
¡û
>C131009982
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
969721
969645
-
Met
CAT
[Ensembl]
¡û
>C131009987
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
815993
815917
-
Met
CAT
[Ensembl]
¡û
>W1710074563
BCZB01000057
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
2712
2788
+
Met
CAT
[ENA]
¡û
>W1710624824
JOPH01000083
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
5365
5441
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK