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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307721 (37 seq.)
>W1710859339
LMCB01000031
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
59371
59447
+
Arg
TCT
[ENA]
¡û
>W1711022092
LQZT01000003
Alphaproteobacteria
Hoeflea olei [LQZT]
63761
63685
-
Arg
TCT
[ENA]
¡û
>W1711167049
LVVZ01000022
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
6222
6146
-
Arg
TCT
[ENA]
¡û
>C171105029
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
3360091
3360015
-
Arg
TCT
-
¡û
>W131160107
AQWH01000051
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
8479
8403
-
Arg
TCT
[ENA]
¡û
>W131229342
AUGS01000006
Alphaproteobacteria
Pseudovibrio exalbescens DSM 16456 [AUGS]
6389
6313
-
Arg
TCT
[ENA]
¡û
>W141180666
AYGY02000082
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
54975
55051
+
Arg
TCT
[ENA]
¡û
>WENV170175915
CEOS01018707
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
786
862
+
Arg
TCT
[ENA]
¡û
>WENV170190311
CEPC01091811
[CEPC] marine metagenome genome assembly TARA_064_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
164
240
+
Arg
TCT
[ENA]
¡û
>WENV170498833
CEVT01076864
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1706
1782
+
Arg
TCT
[ENA]
¡û
>WENV170799782
MDSV01219335
[MDSV] marine metagenome; seawater
14350
14426
+
Arg
TCT
[ENA]
¡û
>WENV170825957
MDSY01102655
[MDSY] marine metagenome; seawater
3335
3259
-
Arg
TCT
[ENA]
¡û
>WENV170896000
MDTD01088501
[MDTD] marine metagenome; seawater
11991
11915
-
Arg
TCT
[ENA]
¡û
>WENV170927855
MDTG01124079
[MDTG] marine metagenome; seawater
2729
2805
+
Arg
TCT
[ENA]
¡û
>W1910989671
NKQT01000002
Alphaproteobacteria
Nesiotobacter exalbescens COD 22 [NKQT]
526564
526640
+
Arg
TCT
[ENA]
¡û
>W1911497527
OCPC01000001
Alphaproteobacteria
Hoeflea halophila KCTC 23107 [OCPC]
66462
66386
-
Arg
TCT
[ENA]
¡û
>W1810365560
PVUG01000001
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
17161
17085
-
Arg
TCT
[ENA]
¡û
>C151072524
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
3751927
3752003
+
Arg
TCT
[Ensembl]
¡û
>C151083084
CP011479
Alphaproteobacteria
Hoeflea sp. IMCC20628 [CP011479]
1914968
1915044
+
Arg
TCT
[Ensembl]
¡û
>W2010302982
CABVLK010000027
Alphaproteobacteria
Hoeflea sp. EC-HK425 [CABVLK]
818778
818854
+
Arg
TCT
[ENA]
¡û
>W2010570130
JAATVV010000002
Alphaproteobacteria
Martelella sp. HB161492 [JAATVV]
236707
236631
-
Arg
TCT
[ENA]
¡û
>W2010636385
JABUOU010000001
Alphaproteobacteria
Martelella limonii NBRC 109441 [JABUOU]
471312
471388
+
Arg
TCT
[ENA]
¡û
>W2010725240
JACIDZ010000001
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
690811
690735
-
Arg
TCT
[ENA]
¡û
>W2010994698
NKQT01000002
Alphaproteobacteria
Nesiotobacter exalbescens COD 22 [NKQT]
526564
526640
+
Arg
TCT
[ENA]
¡û
>W2011158431
OCPC01000001
Alphaproteobacteria
Hoeflea halophila KCTC 23107 [OCPC]
66462
66386
-
Arg
TCT
[ENA]
¡û
>W2011627771
SMAR01000018
Alphaproteobacteria
Martelella mediterranea 175.2 [SMAR]
68628
68704
+
Arg
TCT
[ENA]
¡û
>W2011637805
SMMA01000061
Alphaproteobacteria
Rhodobacteraceae bacterium RKSG542 [SMMA]
552
628
+
Arg
TCT
[ENA]
¡û
>W2011976157
VCLB01000008
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
38514
38438
-
Arg
TCT
[ENA]
¡û
>W2012031672
VHLG01000008
Alphaproteobacteria
Martelella sp. BGMRC2036 [VHLG]
25258
25182
-
Arg
TCT
[ENA]
¡û
>W2110538042
JAGGJU010000003
Alphaproteobacteria
Rhizobium halophytocola DSM 21600 [JAGGJU]
249725
249801
+
Arg
TCT
[ENA]
¡û
>C211232439
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
2455733
2455657
-
Arg
TCT
-
¡û
>C241169413
CP054858
Alphaproteobacteria
Martelella sp. NC18 [CP054858]
2517837
2517913
+
Arg
TCT
-
¡û
>C241169481
CP054861
Alphaproteobacteria
Martelella sp. NC20 [CP054861]
3910964
3910888
-
Arg
TCT
-
¡û
>W1511347478
JRJG01000019
Alphaproteobacteria
Hoeflea sp. BAL378 [JRJG]
17092
17016
-
Arg
TCT
[ENA]
¡û
>C161070387
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
2392684
2392608
-
Arg
TCT
[Ensembl]
¡û
>W1610721685
LMCB01000031
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
59371
59447
+
Arg
TCT
[ENA]
¡û
>W1710550719
FOFM01000008
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
23453
23377
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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