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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307775 (91 seq.)
>W1711082134
LSTQ01000015
Actinomycetota
Corynebacterium stationis [LSTQ]
13523
13448
-
Lys
TTT
[ENA]
¡û
>W1711092560
LTEE01000084
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
8530
8605
+
Lys
TTT
[ENA]
¡û
>W1711093880
LTFJ01000024
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
40662
40737
+
Lys
TTT
[ENA]
¡û
>W1711094375
LTFW01000048
Actinomycetota
Corynebacterium sp. HMSC074A09 HMSC074A09 [LTFW]
5637
5564
-
Lys
TTT
[ENA]
¡û
>W1711095293
LTGR01000027
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
35132
35207
+
Lys
TTT
[ENA]
¡û
>W1711096286
LTHQ01000003
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
18696
18771
+
Lys
TTT
[ENA]
¡û
>W1711098557
LTJR01000010
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
229557
229632
+
Lys
TTT
[ENA]
¡û
>W1711099000
LTKC01000065
Actinomycetota
Corynebacterium sp. HMSC072A04 [LTKC]
37340
37413
+
Lys
TTT
[ENA]
¡û
>W1711099369
LTKK01000051
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
1797
1722
-
Lys
TTT
[ENA]
¡û
>W1711099708
LTKS01000014
Actinomycetota
Corynebacterium sp. HMSC070E08 [LTKS]
35129
35202
+
Lys
TTT
[ENA]
¡û
>W1711102331
LTNQ01000033
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
50295
50370
+
Lys
TTT
[ENA]
¡û
>W1711102395
LTNR01000076
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
39749
39824
+
Lys
TTT
[ENA]
¡û
>W1711102431
LTNS01000032
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
1176
1101
-
Lys
TTT
[ENA]
¡û
>W1711102457
LTNT01000004
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
18690
18765
+
Lys
TTT
[ENA]
¡û
>W1711102546
LTNU01000065
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
18668
18743
+
Lys
TTT
[ENA]
¡û
>W1711102570
LTNV01000030
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
11786
11711
-
Lys
TTT
[ENA]
¡û
>W1711103468
LTOS01000046
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
1783
1708
-
Lys
TTT
[ENA]
¡û
>W1711106067
LTRL01000025
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
5619
5544
-
Lys
TTT
[ENA]
¡û
>W1711107030
LTSJ01000043
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
1150
1075
-
Lys
TTT
[ENA]
¡û
>W1711108152
LTTL01000041
Actinomycetota
Corynebacterium sp. HMSC034H07 HMSC034H07 [LTTL]
129018
129091
+
Lys
TTT
[ENA]
¡û
>W1711110073
LTVE01000048
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
13244
13319
+
Lys
TTT
[ENA]
¡û
>W1711110609
LTVS01000011
Actinomycetota
Corynebacterium sp. HMSC072D12 [LTVS]
24964
25039
+
Lys
TTT
[ENA]
¡û
>W1711110959
LTWA01000025
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
5825
5752
-
Lys
TTT
[ENA]
¡û
>W1711112871
LTXU01000060
Actinomycetota
Corynebacterium sp. HMSC078H07 [LTXU]
5899
5824
-
Lys
TTT
[ENA]
¡û
>W1711113313
LTYF01000007
Actinomycetota
Micrococcus sp. HMSC067E09 [LTYF]
44672
44597
-
Lys
TTT
[ENA]
¡û
>W1711113412
LTYH01000008
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
50472
50547
+
Lys
TTT
[ENA]
¡û
>W1711114942
LTZS01000031
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
1220
1145
-
Lys
TTT
[ENA]
¡û
>W1711185760
LWNQ01000019
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
375
302
-
Lys
TTT
[ENA]
¡û
>W1711185916
LWNU01000013
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
5265
5192
-
Lys
TTT
[ENA]
¡û
>W1711186032
LWNW01000035
Actinomycetota
Corynebacterium sp. HMSC08A12 [LWNW]
7272
7199
-
Lys
TTT
[ENA]
¡û
>W1711186577
LWOI01000046
Actinomycetota
Corynebacterium sp. HMSC05E07 [LWOI]
42667
42740
+
Lys
TTT
[ENA]
¡û
>W1711186666
LWOK01000008
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
930
855
-
Lys
TTT
[ENA]
¡û
>W1711187870
LWPW01000006
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
15368
15443
+
Lys
TTT
[ENA]
¡û
>W1711208390
LXGG01000008
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
4523
4448
-
Lys
TTT
[ENA]
¡û
>W131206271
ATFO01000002
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
10481
10408
-
Lys
TTT
[ENA]
¡û
>W1711724028
MTPT01000044
Actinomycetota
Corynebacterium amycolatum [MTPT]
18880
18955
+
Lys
TTT
[ENA]
¡û
>W131251673
CAVS020000037
Actinomycetota
Corynebacterium ihumii GD7 [CAVS]
153
78
-
Lys
TTT
[ENA]
¡û
>W131169252
AREP01000011
Actinomycetota
Corynebacterium pilosum DSM 20521 [AREP]
8471
8396
-
Lys
TTT
[ENA]
¡û
>WENV181212496
OFBQ01002271
[OFBQ] metagenome; hydrothermal vent
488
414
-
Lys
TTT
[ENA]
¢þ
>WENV181326426
OFLL01000409
[OFLL] metagenome; faeces
1044
971
-
Lys
TTT
[ENA]
¢þ
>WENV182629003
OJKR01000995
[OJKR] metagenome; surface
3999
4073
+
Lys
TTT
[ENA]
¢þ
>WENV182636069
OJKZ01000198
[OJKZ] metagenome; surface
25865
25939
+
Lys
TTT
[ENA]
¢þ
>WENV182636183
OJKZ01000801
[OJKZ] metagenome; surface
8787
8861
+
Lys
TTT
[ENA]
¢þ
>WENV182636430
OJKZ01007526
[OJKZ] metagenome; surface
727
654
-
Lys
TTT
[ENA]
¢þ
>WENV182640278
OJLB01001737
[OJLB] metagenome; surface
4294
4368
+
Lys
TTT
[ENA]
¢þ
>WENV182641855
OJLK01004351
[OJLK] metagenome; surface
500
574
+
Lys
TTT
[ENA]
¢þ
>WENV182643400
OJLU01006162
[OJLU] metagenome; surface
509
436
-
Lys
TTT
[ENA]
¢þ
>WENV182644674
OJLY01000142
[OJLY] metagenome; surface
56741
56815
+
Lys
TTT
[ENA]
¢þ
>WENV182644862
OJLY01000590
[OJLY] metagenome; surface
12095
12021
-
Lys
TTT
[ENA]
¢þ
>WENV182645301
OJLY01008417
[OJLY] metagenome; surface
730
657
-
Lys
TTT
[ENA]
¢þ
>WENV182671845
OJNM01004684
[OJNM] metagenome; surface
728
655
-
Lys
TTT
[ENA]
¢þ
>WENV182819723
OKAF01003951
[OKAF] human gut metagenome; human gut
168
95
-
Lys
TTT
[ENA]
¢þ
>WENV182825563
OKCK01000557
[OKCK] human gut metagenome; human gut
3772
3699
-
Lys
TTT
[ENA]
¢þ
>WENV182831632
OKEG01000037
[OKEG] human gut metagenome; human gut
2803
2730
-
Lys
TTT
[ENA]
¢þ
>WENV182837564
OKGJ01000201
[OKGJ] human gut metagenome; human gut
345
272
-
Lys
TTT
[ENA]
¢þ
>WENV182855126
OKMY01000070
[OKMY] human gut metagenome; human gut
2803
2730
-
Lys
TTT
[ENA]
¢þ
>W141400421
JDRS01000002
Actinomycetota
Dermabacter hominis 1368 [JDRS]
179850
179777
-
Lys
TTT
[ENA]
¡û
>W141453288
JFCO01000034
Actinomycetota
Corynebacterium jeikeium [JFCO]
2698
2623
-
Lys
TTT
[ENA]
¡û
>C181214795
LS483460
Actinomycetota
Corynebacterium minutissimum NCTC10288 [LS483460]
481765
481838
+
Lys
TTT
-
¡û
>C181215132
LS483464
Actinomycetota
Corynebacterium renale NCTC7448 [LS483464]
381103
381030
-
Lys
TTT
-
¡û
>C181226207
LT906473
Actinomycetota
Corynebacterium cystitidis NCTC11863 [LT906473]
282125
282200
+
Lys
TTT
-
¡û
>C191207677
LR134339
Actinomycetota
Corynebacterium minutissimum NCTC10285 [LR134339]
2451325
2451252
-
Lys
TTT
-
¡û
>W09114666
ABZU01000027
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
12613
12688
+
Lys
TTT
[ENA]
¡û
>W09127841
ACLH01000052
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
29047
29122
+
Lys
TTT
[ENA]
¡û
>W1910377684
FUKP01000024
Actinomycetota
Micrococcus lylae 2B3F [FUKP]
7262
7336
+
Lys
TTT
[ENA]
¡û
>W1910442369
FWFE01000046
Actinomycetota
Corynebacterium casei JB4 [FWFE]
7316
7243
-
Lys
TTT
[ENA]
¡û
>W1911243395
NSGL01000003
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
214564
214638
+
Lys
TTT
[ENA]
¡û
>W1911243439
NSGM01000003
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
26118
26044
-
Lys
TTT
[ENA]
¡û
>W1911243502
NSGN01000009
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
18970
18896
-
Lys
TTT
[ENA]
¡û
>W1911596625
PNHI01000001
Actinomycetota
Corynebacterium aurimucosum UMB1300 [PNHI]
328157
328230
+
Lys
TTT
[ENA]
¡û
>W1810058118
PDJF01000001
Actinomycetota
Corynebacterium renale DSM 20688 [PDJF]
1207645
1207718
+
Lys
TTT
[ENA]
¡û
>W1810187631
PKHS01000009
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
11931
11858
-
Lys
TTT
[ENA]
¡û
>W1810187675
PKHT01000014
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
239
166
-
Lys
TTT
[ENA]
¡û
>W1810788294
QREH01000001
Actinomycetota
Citricoccus muralis DSM 14442 [QREH]
2779614
2779688
+
Lys
TTT
[ENA]
¡û
>C151039887
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
780506
780431
-
Lys
TTT
[Ensembl]
¡û
>C151073129
CP010827
Actinomycetota
Corynebacterium singulare IBS B52218 [CP010827]
2329004
2328931
-
Lys
TTT
[Ensembl]
¡û
>C151079715
CP011311
Actinomycetota
Corynebacterium camporealensis DSM 44610 [CP011311]
2018805
2018732
-
Lys
TTT
[Ensembl]
¡û
>W1511351433
JRNG01000004
Actinomycetota
Corynebacterium tuscaniense DNF00037 [JRNG]
125112
125185
+
Lys
TTT
[ENA]
¡û
>W1511356269
JRUB01000001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [JRUB]
204292
204365
+
Lys
TTT
[ENA]
¡û
>W1511438568
JUMN01000104
Actinomycetota
Corynebacterium aurimucosum 945_CAUR [JUMN]
714
641
-
Lys
TTT
[ENA]
¡û
>W1511457808
JVIP01000036
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
2479
2404
-
Lys
TTT
[ENA]
¡û
>W1511464320
JVPT01000059
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
42379
42454
+
Lys
TTT
[ENA]
¡û
>W1511476412
JWEP01000024
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
38603
38678
+
Lys
TTT
[ENA]
¡û
>W1511644847
LDYD01000011
Actinomycetota
Corynebacterium pilosum CIP103422 [LDYD]
87163
87238
+
Lys
TTT
[ENA]
¡û
>W11172411
AFRW01000112
Actinomycetota
Nesterenkonia sp. F [AFRW]
3271
3196
-
Lys
TTT
[ENA]
¡û
>W1610068161
BCRC01000009
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
111755
111828
+
Lys
TTT
[ENA]
¡û
>W1610095076
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
25884
25811
-
Lys
TTT
[ENA]
¡û
>W1610920919
LSTQ01000015
Actinomycetota
Corynebacterium stationis [LSTQ]
13523
13448
-
Lys
TTT
[ENA]
¡û
>W1610996152
LXGG01000008
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
4523
4448
-
Lys
TTT
[ENA]
¡û
>W1710065534
BCRC01000009
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
111755
111828
+
Lys
TTT
[ENA]
¡û
>W1710097871
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
25884
25811
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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