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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307879 (115 seq.)
>W1710796597
LJSF01000043
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
252484
252408
-
Met
CAT
[ENA]
¡û
>W1710806509
LKBA01000001
Alphaproteobacteria
Aliiroseovarius crassostreae [LKBA]
259742
259818
+
Met
CAT
[ENA]
¡û
>w014858
AAOT01000022
Alphaproteobacteria
Oceanicola granulosus HTCC2516 [AAOT]
40726
40648
-
Met
CAT
[ENA]
¡û
>W141043768
AMGO01000020
Alphaproteobacteria
Oceaniovalibus guishaninsula JLT2003 [AMGO]
12968
13044
+
Met
CAT
[ENA]
¡û
>WENV181233698
OFET01000049
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
80050
79974
-
Met
CAT
[ENA]
¡û
>WENV018945
AACY020522913
Marine microbial communities from Global Ocean Sampling (GOS)
5485
5563
+
Met
CAT
[ENA]
>WENV183704184
PDWI01000067
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
66775
66699
-
Met
CAT
[ENA]
¡û
>WENV183709028
PDWI01022987
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1420
1496
+
Met
CAT
[ENA]
¡û
>WENV183710548
PDWI01048737
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1437
1513
+
Met
CAT
[ENA]
¡û
>WENV183711607
PDWI01074440
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3951
4027
+
Met
CAT
[ENA]
¡û
>WENV183711669
PDWI01076166
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2508
2584
+
Met
CAT
[ENA]
¡û
>WENV183716643
PDWJ01000100
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
86862
86786
-
Met
CAT
[ENA]
¡û
>WENV183718738
PDWJ01006255
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6322
6246
-
Met
CAT
[ENA]
¡û
>WENV183720363
PDWJ01032408
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2544
2620
+
Met
CAT
[ENA]
¡û
>WENV183721834
PDWJ01090355
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1374
1298
-
Met
CAT
[ENA]
¡û
>WENV183750487
PPFU01311074
[PPFU] hypolithon metagenome; Antarctic Hypolithon
92
167
+
Met
CAT
[ENA]
¡û
>WENV170635349
JDSF01004550
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
306
382
+
Met
CAT
[ENA]
¡û
>WENV170646355
JQGR01000134
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
7084
7160
+
Met
CAT
[ENA]
¡û
>WENV170704960
LLEO01000034
[LLEO] bioreactor metagenome; day35 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
11394
11470
+
Met
CAT
[ENA]
¡û
>W141813546
JQEY01000002
Alphaproteobacteria
Palleronia rufa MOLA 401 [JQEY]
256050
255974
-
Met
CAT
[ENA]
¡û
>W1910443176
FWFV01000011
Alphaproteobacteria
Palleronia marisminoris CECT 7066 [FWFV]
60593
60517
-
Met
CAT
[ENA]
¡û
>W1910443321
FWFZ01000002
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
130495
130571
+
Met
CAT
[ENA]
¡û
>W1911538390
OMOI01000001
Alphaproteobacteria
Aliiroseovarius pelagivivens CECT 8811 [OMOI]
37041
37117
+
Met
CAT
[ENA]
¡û
>W1911539787
ONZF01000007
Alphaproteobacteria
Palleronia abyssalis CECT 8504 [ONZF]
112981
113057
+
Met
CAT
[ENA]
¡û
>W1911597549
PNOS01000073
Alphaproteobacteria
Rhodobacteraceae bacterium XY-R6 [PNOS]
1427
1351
-
Met
CAT
[ENA]
¡û
>W1810580448
QETF01000009
Alphaproteobacteria
Salibaculum griseiflavum WDS4C29 [QETF]
64136
64212
+
Met
CAT
[ENA]
¡û
>W2010406540
FWFV01000011
Alphaproteobacteria
Palleronia marisminoris CECT 7066 [FWFV]
60593
60517
-
Met
CAT
[ENA]
¡û
>W2010406685
FWFZ01000002
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
130495
130571
+
Met
CAT
[ENA]
¡û
>W2010469904
JAAGOY010000004
Alphaproteobacteria
Aliiroseovarius sp. PrR006 [JAAGOY]
1692290
1692214
-
Met
CAT
[ENA]
¡û
>W2010489538
JAAJBD010000002
Alphaproteobacteria
Boseongicola sp. TAW-CT132 [JAAJBD]
640824
640900
+
Met
CAT
[ENA]
¡û
>W2011168620
OMOI01000001
Alphaproteobacteria
Aliiroseovarius pelagivivens CECT 8811 [OMOI]
37041
37117
+
Met
CAT
[ENA]
¡û
>W2011170062
ONZF01000007
Alphaproteobacteria
Palleronia abyssalis CECT 8504 [ONZF]
112981
113057
+
Met
CAT
[ENA]
¡û
>W2011206448
PNOS01000073
Alphaproteobacteria
Rhodobacteraceae bacterium XY-R6 [PNOS]
1427
1351
-
Met
CAT
[ENA]
¡û
>W2011387095
RBVZ01000002
Alphaproteobacteria
Ponticoccus sp. LZ-14 [RBVZ]
394179
394255
+
Met
CAT
[ENA]
¡û
>W2011411113
RDRB01000005
Alphaproteobacteria
Rhodobacteraceae bacterium B17 [RDRB]
176802
176726
-
Met
CAT
[ENA]
¡û
>W2011524352
SAIT01000011
Alphaproteobacteria
Aliiroseovarius sp. A6024 [SAIT]
34315
34391
+
Met
CAT
[ENA]
¡û
>W2011643094
SNAA01000019
Alphaproteobacteria
Primorskyibacter sp. SS33 [SNAA]
53636
53560
-
Met
CAT
[ENA]
¡û
>W2012015045
VFFF01000002
Alphaproteobacteria
Rhodobacteraceae bacterium SM1903 [VFFF]
511049
510973
-
Met
CAT
[ENA]
¡û
>W2012023884
VFSV01000037
Alphaproteobacteria
Rhodobacteraceae bacterium JBTF-M29 [VFSV]
8900
8824
-
Met
CAT
[ENA]
¡û
>W2012037086
VICH01000001
Alphaproteobacteria
Aliiroseovarius halocynthiae MA1-10 [VICH]
18899
18975
+
Met
CAT
[ENA]
¡û
>W2012130706
VSIY01000004
Alphaproteobacteria
Boseongicola sp. HY14 [VSIY]
82954
83030
+
Met
CAT
[ENA]
¡û
>W2012130983
VSJK01000012
Alphaproteobacteria
Oceaniovalibus sp. ACAM 378 [VSJK]
47748
47824
+
Met
CAT
[ENA]
¡û
>W2012208557
VYQE01000007
Alphaproteobacteria
Histidinibacterium sp. 176SS1-4 [VYQE]
68606
68530
-
Met
CAT
[ENA]
¡û
>W2012234974
WBXQ01000006
Alphaproteobacteria
Aliiroseovarius sp. xm-a-104 [WBXQ]
228355
228279
-
Met
CAT
[ENA]
¡û
>W2012235002
WBXR01000002
Alphaproteobacteria
Aliiroseovarius sp. xm-a-134 [WBXR]
25946
26022
+
Met
CAT
[ENA]
¡û
>W2012235061
WBXS01000007
Alphaproteobacteria
Aliiroseovarius sp. xm-a-151 [WBXS]
25945
26021
+
Met
CAT
[ENA]
¡û
>W2012235110
WBXT01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-d-517 [WBXT]
2640608
2640684
+
Met
CAT
[ENA]
¡û
>W2012235156
WBXU01000005
Alphaproteobacteria
Aliiroseovarius sp. xm-g-7 [WBXU]
231987
231911
-
Met
CAT
[ENA]
¡û
>W2012235183
WBXV01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-m-309 [WBXV]
25953
26029
+
Met
CAT
[ENA]
¡û
>W2012235235
WBXW01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-m-314 [WBXW]
889408
889332
-
Met
CAT
[ENA]
¡û
>W2012235307
WBXX01000007
Alphaproteobacteria
Aliiroseovarius sp. xm-m-339-2 [WBXX]
25945
26021
+
Met
CAT
[ENA]
¡û
>W2012235331
WBXY01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-m-354 [WBXY]
25946
26022
+
Met
CAT
[ENA]
¡û
>W2012235391
WBXZ01000002
Alphaproteobacteria
Aliiroseovarius sp. xm-m-378 [WBXZ]
707008
706932
-
Met
CAT
[ENA]
¡û
>W2012235452
WBYA01000006
Alphaproteobacteria
Aliiroseovarius sp. xm-m-379 [WBYA]
228355
228279
-
Met
CAT
[ENA]
¡û
>W2012235472
WBYB01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-v-201 [WBYB]
25953
26029
+
Met
CAT
[ENA]
¡û
>W2012235547
WBYC01000006
Alphaproteobacteria
Aliiroseovarius sp. xm-v-204 [WBYC]
228355
228279
-
Met
CAT
[ENA]
¡û
>W2012235570
WBYD01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-v-208 [WBYD]
977642
977566
-
Met
CAT
[ENA]
¡û
>W2012235619
WBYE01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-v-209 [WBYE]
889408
889332
-
Met
CAT
[ENA]
¡û
>W2012235679
WBYF01000002
Alphaproteobacteria
Aliiroseovarius sp. xm-v-225 [WBYF]
707008
706932
-
Met
CAT
[ENA]
¡û
>W2110023801
BMGI01000001
Alphaproteobacteria
Maritimibacter lacisalsi CGMCC 1.12922 [BMGI]
504630
504554
-
Met
CAT
[ENA]
¡û
>W2110054342
BNCH01000011
Alphaproteobacteria
Aliiroseovarius zhejiangensis KCTC 42443 [BNCH]
61771
61695
-
Met
CAT
[ENA]
¡û
>W2110240235
JACNMM010000021
Alphaproteobacteria
Oceaniglobus trochenteri G4 [JACNMM]
23989
23913
-
Met
CAT
[ENA]
¡û
>W2110463752
JAFBMV010000002
Alphaproteobacteria
Ponticoccus sp. SC6-9 [JAFBMV]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110463798
JAFBMW010000002
Alphaproteobacteria
Ponticoccus sp. SC6-8 [JAFBMW]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110463852
JAFBMX010000002
Alphaproteobacteria
Ponticoccus sp. SC6-7 [JAFBMX]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110463888
JAFBMY010000002
Alphaproteobacteria
Ponticoccus sp. SC6-69 [JAFBMY]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110463920
JAFBMZ010000002
Alphaproteobacteria
Ponticoccus sp. SC6-66 [JAFBMZ]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110463969
JAFBNA010000002
Alphaproteobacteria
Ponticoccus sp. SC6-65 [JAFBNA]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110464008
JAFBNB010000002
Alphaproteobacteria
Ponticoccus sp. SC6-64 [JAFBNB]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110464053
JAFBNC010000002
Alphaproteobacteria
Ponticoccus sp. SC6-60 [JAFBNC]
976021
976097
+
Met
CAT
[ENA]
¡û
>W2110464095
JAFBND010000002
Alphaproteobacteria
Ponticoccus sp. SC6-56 [JAFBND]
976021
976097
+
Met
CAT
[ENA]
¡û
>W2110464137
JAFBNE010000002
Alphaproteobacteria
Ponticoccus sp. SC6-49 [JAFBNE]
976021
976097
+
Met
CAT
[ENA]
¡û
>W2110464188
JAFBNF010000002
Alphaproteobacteria
Ponticoccus sp. SC6-45 [JAFBNF]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110464230
JAFBNG010000002
Alphaproteobacteria
Ponticoccus sp. SC6-42 [JAFBNG]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110464246
JAFBNH010000001
Alphaproteobacteria
Ponticoccus sp. SC6-38 [JAFBNH]
976021
976097
+
Met
CAT
[ENA]
¡û
>W2110464305
JAFBNI010000002
Alphaproteobacteria
Ponticoccus sp. SC6-36 [JAFBNI]
976021
976097
+
Met
CAT
[ENA]
¡û
>W2110464344
JAFBNJ010000002
Alphaproteobacteria
Ponticoccus sp. SC6-33 [JAFBNJ]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110464386
JAFBNK010000002
Alphaproteobacteria
Ponticoccus sp. SC6-32 [JAFBNK]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110464434
JAFBNL010000002
Alphaproteobacteria
Ponticoccus sp. SC6-31 [JAFBNL]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110464472
JAFBNM010000002
Alphaproteobacteria
Ponticoccus sp. SC6-18 [JAFBNM]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110464512
JAFBNN010000002
Alphaproteobacteria
Ponticoccus sp. SC6-15 [JAFBNN]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110464560
JAFBNO010000002
Alphaproteobacteria
Ponticoccus sp. SC6-11 [JAFBNO]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110464589
JAFBNP010000002
Alphaproteobacteria
Ponticoccus sp. SC2-98 [JAFBNP]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110464644
JAFBNQ010000002
Alphaproteobacteria
Ponticoccus sp. SC2-95 [JAFBNQ]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110464682
JAFBNR010000002
Alphaproteobacteria
Ponticoccus sp. SC2-67 [JAFBNR]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110464718
JAFBNS010000002
Alphaproteobacteria
Ponticoccus sp. SC2-64 [JAFBNS]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110464767
JAFBNT010000002
Alphaproteobacteria
Ponticoccus sp. SC2-60 [JAFBNT]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110464804
JAFBNU010000002
Alphaproteobacteria
Ponticoccus sp. SC2-58 [JAFBNU]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110464848
JAFBNV010000002
Alphaproteobacteria
Ponticoccus sp. SC2-56 [JAFBNV]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110464887
JAFBNW010000002
Alphaproteobacteria
Ponticoccus sp. SC2-37 [JAFBNW]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110464924
JAFBNX010000002
Alphaproteobacteria
Ponticoccus sp. SC2-36 [JAFBNX]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110464974
JAFBNY010000002
Alphaproteobacteria
Ponticoccus sp. SC2-35 [JAFBNY]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110465013
JAFBNZ010000002
Alphaproteobacteria
Ponticoccus sp. SC2-30 [JAFBNZ]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110465061
JAFBOA010000002
Alphaproteobacteria
Ponticoccus sp. SC2-24 [JAFBOA]
212521
212445
-
Met
CAT
[ENA]
¡û
>W2110465102
JAFBOB010000002
Alphaproteobacteria
Ponticoccus sp. SC2-23 [JAFBOB]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110465135
JAFBOC010000002
Alphaproteobacteria
Ponticoccus sp. SC2-22 [JAFBOC]
394256
394332
+
Met
CAT
[ENA]
¡û
>W2110465186
JAFBOD010000002
Alphaproteobacteria
Ponticoccus sp. SC2-20 [JAFBOD]
424313
424237
-
Met
CAT
[ENA]
¡û
>W2110650595
JAHUZF010000004
Alphaproteobacteria
Maritimibacter sp. DP1N21-5 [JAHUZF]
147580
147504
-
Met
CAT
[ENA]
¡û
>C211216948
CP065915
Alphaproteobacteria
Pelagovum pacificum SM1903 [CP065915]
3484131
3484055
-
Met
CAT
-
¡û
>C231167771
CP080772
Alphaproteobacteria
Aliiroseovarius crassostreae S044 [CP080772]
2508463
2508387
-
Met
CAT
-
¡û
>C231167820
CP080774
Alphaproteobacteria
Aliiroseovarius crassostreae S051 [CP080774]
2491709
2491633
-
Met
CAT
-
¡û
>C231167869
CP080776
Alphaproteobacteria
Aliiroseovarius crassostreae S056 [CP080776]
2496111
2496035
-
Met
CAT
-
¡û
>C231167918
CP080778
Alphaproteobacteria
Aliiroseovarius crassostreae S128 [CP080778]
2485220
2485144
-
Met
CAT
-
¡û
>C231167967
CP080780
Alphaproteobacteria
Aliiroseovarius crassostreae S137 [CP080780]
2544389
2544313
-
Met
CAT
-
¡û
>C231168015
CP080782
Alphaproteobacteria
Aliiroseovarius crassostreae S202 [CP080782]
2483444
2483368
-
Met
CAT
-
¡û
>C231168065
CP080784
Alphaproteobacteria
Aliiroseovarius crassostreae S204 [CP080784]
2510967
2510891
-
Met
CAT
-
¡û
>C231168114
CP080786
Alphaproteobacteria
Aliiroseovarius crassostreae S212 [CP080786]
2474586
2474510
-
Met
CAT
-
¡û
>W2310019475
BROH01000008
Alphaproteobacteria
Sinisalibacter aestuarii B-399 [BROH]
18718
18794
+
Met
CAT
[ENA]
¡û
>WENV070569
AACY023814100
Marine microbial communities from Global Ocean Sampling (GOS)
859
937
+
Met
CAT
[ENA]
>W1610660554
LJSF01000043
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
252484
252408
-
Met
CAT
[ENA]
¡û
>W1610670283
LKBA01000001
Alphaproteobacteria
Aliiroseovarius crassostreae [LKBA]
259742
259818
+
Met
CAT
[ENA]
¡û
>W1710555076
FOJB01000001
Alphaproteobacteria
Aliiroseovarius sediminilitoris [FOJB]
2996983
2996907
-
Met
CAT
[ENA]
¡û
>W1710562831
FOPF01000012
Alphaproteobacteria
Palleronia marisminoris [FOPF]
60714
60638
-
Met
CAT
[ENA]
¡û
>W1710578602
FPBS01000008
Alphaproteobacteria
Aliiroseovarius crassostreae [FPBS]
24800
24876
+
Met
CAT
[ENA]
¡û
>W1710609074
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
1189620
1189696
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
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(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
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Direction
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Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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