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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308214 (39 seq.)
>WENV180296440
OBJA01000530
[OBJA] soil metagenome; sediment, water from around vicinity
17123
17196
+
Trp
CCA
[ENA]
¡û
>WENV180583516
OCNB01095170
[OCNB] metagenome; diffuse fluid
115
42
-
Trp
CCA
[ENA]
¡û
>WENV180637377
OCRG01014621
[OCRG] marine metagenome; seawater
401
328
-
Trp
CCA
[ENA]
¡û
>WENV181126483
OEFV01114858
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
73
146
+
Trp
CCA
[ENA]
¡û
>WENV183706033
PDWI01002940
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
12080
12153
+
Trp
CCA
[ENA]
¡û
>WENV183706619
PDWI01004834
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6036
6109
+
Trp
CCA
[ENA]
¡û
>WENV183709290
PDWI01026573
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9672
9745
+
Trp
CCA
[ENA]
¡û
>WENV183710628
PDWI01050277
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
88
15
-
Trp
CCA
[ENA]
¡û
>WENV183717190
PDWJ01000557
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
32480
32407
-
Trp
CCA
[ENA]
¡û
>WENV183718175
PDWJ01002667
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5448
5521
+
Trp
CCA
[ENA]
¡û
>WENV183719182
PDWJ01010453
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5506
5579
+
Trp
CCA
[ENA]
¡û
>WENV170014000
AVFP01001412
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
639
564
-
Trp
CCA
[ENA]
¡û
>WENV170469149
CEVF01089509
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
173
248
+
Trp
CCA
[ENA]
¡û
>WENV170724213
LSQX01297327
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
44301
44226
-
Trp
CCA
[ENA]
¡û
>WENV170900353
MDTD01152966
[MDTD] marine metagenome; seawater
883
808
-
Trp
CCA
[ENA]
¡û
>WENV170980778
MWVT01000780
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
989
1062
+
Trp
CCA
[ENA]
¡û
>WENV170982254
MWVU01045504
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
301
228
-
Trp
CCA
[ENA]
¡û
>WENV170983172
MWVV01010148
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
228
301
+
Trp
CCA
[ENA]
¡û
>WENV170984699
MWVV01399428
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
173
100
-
Trp
CCA
[ENA]
¡û
>WENV170985195
MWVW01038533
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
212
287
+
Trp
CCA
[ENA]
¡û
>WENV170985862
MWVX01005141
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
265
340
+
Trp
CCA
[ENA]
¡û
>WENV170989963
MWVZ01164070
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
104
29
-
Trp
CCA
[ENA]
¡û
>WENV170992051
MWWB01000163
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
1488
1561
+
Trp
CCA
[ENA]
¡û
>WENV170992148
MWWB01003328
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
3186
3111
-
Trp
CCA
[ENA]
¡û
>WENV170997253
MWWG01065360
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
333
406
+
Trp
CCA
[ENA]
¡û
>WENV170999584
MWWK01104675
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
115
40
-
Trp
CCA
[ENA]
¡û
>C211279262
CP070608
Bacteroidota
Fulvivirga sp. S481 [CP070608]
5116
5043
-
Trp
CCA
-
¡û
>W2310016125
BQKE01000001
Bacteroidota
Persicobacter diffluens NBRC 15940 [BQKE]
1465060
1465133
+
Trp
CCA
[ENA]
¡û
>W2310016127
BQKE01000001
Bacteroidota
Persicobacter diffluens NBRC 15940 [BQKE]
1465256
1465331
+
Trp
CCA
[ENA]
¡û
>W2310016129
BQKE01000001
Bacteroidota
Persicobacter diffluens NBRC 15940 [BQKE]
1465453
1465526
+
Trp
CCA
[ENA]
¡û
>W2310016195
BQKE01000001
Bacteroidota
Persicobacter diffluens NBRC 15940 [BQKE]
3207765
3207692
-
Trp
CCA
[ENA]
¡û
>W1511590318
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
925659
925732
+
Trp
CCA
[ENA]
¡û
>W1511590320
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
925855
925930
+
Trp
CCA
[ENA]
¡û
>W1511590322
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
926052
926125
+
Trp
CCA
[ENA]
¡û
>W1511590372
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
3740984
3741059
+
Trp
CCA
[ENA]
¡û
>C161046298
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
2101201
2101274
+
Trp
CCA
-
¡û
>C161046300
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
2101396
2101471
+
Trp
CCA
-
¡û
>C161046302
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
2101593
2101666
+
Trp
CCA
-
¡û
>C161046392
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
158497
158422
-
Trp
CCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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