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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308550 (35 seq.)
>WENV180000181
FLNU01000277
[FLNU] bioreactor metagenome; Moose rumen
165
91
-
Gly
CCC
[ENA]
¡û
>WENV180000588
FLNV01000773
[FLNV] bioreactor metagenome; Moose rumen
7733
7660
-
Gly
CCC
[ENA]
¡û
>WENV180000726
FLNV01001444
[FLNV] bioreactor metagenome; Moose rumen
1888
1961
+
Gly
CCC
[ENA]
¡û
>WENV180003139
FLNY01005003
[FLNY] bioreactor metagenome; Moose rumen
4918
4844
-
Gly
CCC
[ENA]
¡û
>WENV180003513
FLNZ01005222
[FLNZ] bioreactor metagenome; Moose rumen
14682
14755
+
Gly
CCC
[ENA]
¡û
>WENV180338820
OBLI01001121
[OBLI] pig gut metagenome; faeces
7497
7572
+
Gly
CCC
[ENA]
¡û
>WENV180338951
OBLI01001558
[OBLI] pig gut metagenome; faeces
7847
7920
+
Gly
CCC
[ENA]
¡û
>WENV180341065
OBLI01073120
[OBLI] pig gut metagenome; faeces
8
81
+
Gly
CCC
[ENA]
¡û
>WENV180663529
OCVV011125828
[OCVV] gut metagenome; gut
1180
1107
-
Gly
CCC
[ENA]
¡û
>WENV180663532
OCVV011125828
[OCVV] gut metagenome; gut
1180
1107
-
Gly
CCC
[ENA]
¡û
>WENV180671160
OCVV011312755
[OCVV] gut metagenome; gut
2226
2299
+
Gly
CCC
[ENA]
¡û
>WENV180671164
OCVV011312755
[OCVV] gut metagenome; gut
2226
2299
+
Gly
CCC
[ENA]
¡û
>WENV180684004
OCVV012850977
[OCVV] gut metagenome; gut
288
215
-
Gly
CCC
[ENA]
¡û
>WENV180684006
OCVV012850977
[OCVV] gut metagenome; gut
288
215
-
Gly
CCC
[ENA]
¡û
>WENV180686294
OCVV012884653
[OCVV] gut metagenome; gut
4222
4296
+
Gly
CCC
[ENA]
¡û
>WENV180686297
OCVV012884653
[OCVV] gut metagenome; gut
4222
4296
+
Gly
CCC
[ENA]
¡û
>WENV170775017
LXOW01001004
[LXOW] bovine gut metagenome; Cow rumen
3255
3330
+
Gly
CCC
[ENA]
¡û
>WENV170775688
LXOW01076919
[LXOW] bovine gut metagenome; Cow rumen
3594
3519
-
Gly
CCC
[ENA]
¡û
>WENV170775778
LXOW01087605
[LXOW] bovine gut metagenome; Cow rumen
243
170
-
Gly
CCC
[ENA]
¡û
>WENV170777849
LXOW01329943
[LXOW] bovine gut metagenome; Cow rumen
3121
3194
+
Gly
CCC
[ENA]
¡û
>W141560066
JHXG01000013
Bacteroidota
Xylanibacter brevis P6B11 [JHXG]
26612
26537
-
Gly
CCC
[ENA]
¡û
>W141560320
JHXM01000008
Bacteroidota
Xylanibacter brevis ATCC 19188 [JHXM]
143655
143730
+
Gly
CCC
[ENA]
¡û
>W1910550527
FZQZ01000005
Bacteroidota
Prevotellaceae bacterium MN60 [FZQZ]
94509
94582
+
Gly
CCC
[ENA]
¡û
>W2010432150
FZQZ01000005
Bacteroidota
Prevotellaceae bacterium MN60 [FZQZ]
94509
94582
+
Gly
CCC
[ENA]
¡û
>C231305979
CP091786
Bacteroidota
Prevotella sp. E9-3 [CP091786]
2066415
2066342
-
Gly
CCC
-
¡û
>C231306026
CP091787
Bacteroidota
Prevotella sp. E13-17 [CP091787]
1930758
1930685
-
Gly
CCC
-
¡û
>C231306078
CP091788
Bacteroidota
Prevotella sp. E2-28 [CP091788]
2215318
2215245
-
Gly
CCC
-
¡û
>C231306106
CP091790
Bacteroidota
Prevotella sp. E13-3 [CP091790]
1614375
1614448
+
Gly
CCC
-
¡û
>C231306156
CP091791
Bacteroidota
Prevotella sp. E2-25 [CP091791]
1520551
1520624
+
Gly
CCC
-
¡û
>C231306206
CP091792
Bacteroidota
Prevotella sp. E1-9 [CP091792]
1544221
1544294
+
Gly
CCC
-
¡û
>C231306258
CP091793
Bacteroidota
Prevotella sp. E1-a [CP091793]
1544213
1544286
+
Gly
CCC
-
¡û
>C231306333
CP091794
Bacteroidota
Prevotella sp. E15-14 [CP091794]
2005059
2004986
-
Gly
CCC
-
¡û
>W1710516562
FNCQ01000016
Bacteroidota
Prevotella communis BP1-148 [FNCQ]
90798
90725
-
Gly
CCC
[ENA]
¡û
>W1710533509
FNRE01000004
Bacteroidota
Prevotella sp. tc2-28 [FNRE]
117523
117596
+
Gly
CCC
[ENA]
¡û
>W1710579723
FPIT01000010
Bacteroidota
Prevotellaceae bacterium HUN156 [FPIT]
105198
105125
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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