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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308714 (27 seq.)
>W1710894004
LNFH01000393
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
29317
29241
-
Arg
CCG
[ENA]
¡û
>WENV180032082
FTJU01072114
[FTJU] metagenome; soil
1355
1431
+
Arg
CCG
[ENA]
¡û
>C08000329
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
3766370
3766297
-
Arg
CCG
[Ensembl]
¡û
>C181158531
CP027668
Alphaproteobacteria
Phreatobacter cathodiphilus S-12 [CP027668]
3282692
3282768
+
Arg
CCG
-
¡û
>W141733743
JNLC01000011
Alphaproteobacteria
Bosea sp. 117 [JNLC]
9660
9584
-
Arg
CCG
[ENA]
¡û
>W1911738164
QUOQ01000006
Alphaproteobacteria
Brevundimonas sp. NS26 [QUOQ]
47436
47512
+
Arg
CCG
[ENA]
¡û
>W2010317627
CACSAS010000001
Alphaproteobacteria
Starkeya sp. HF14-78462 [CACSAS]
76358
76282
-
Arg
CCG
[ENA]
¡û
>W2011305439
QUOQ01000006
Alphaproteobacteria
Brevundimonas sp. NS26 [QUOQ]
47436
47512
+
Arg
CCG
[ENA]
¡û
>W2011627323
SMAI01000006
Alphaproteobacteria
Aquabacter spiritensis DSM 9035 [SMAI]
258586
258662
+
Arg
CCG
[ENA]
¡û
>W2012088612
VMBP01000001
Alphaproteobacteria
Starkeya sp. 3C [VMBP]
1318690
1318766
+
Arg
CCG
[ENA]
¡û
>W2110019145
BMCP01000001
Alphaproteobacteria
Agaricicola taiwanensis CCM 7684 [BMCP]
757047
756971
-
Arg
CCG
[ENA]
¡û
>W2110019330
BMCT01000003
Alphaproteobacteria
Azorhizobium oxalatiphilum CCM 7897 [BMCT]
422416
422492
+
Arg
CCG
[ENA]
¡û
>W2110590272
JAHBGB010000019
Alphaproteobacteria
Ancylobacter oerskovii CCM 7435 [JAHBGB]
127080
127004
-
Arg
CCG
[ENA]
¡û
>W2110590341
JAHBGC010000064
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [JAHBGC]
5586
5662
+
Arg
CCG
[ENA]
¡û
>W2110590386
JAHBGD010000026
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [JAHBGD]
136960
137036
+
Arg
CCG
[ENA]
¡û
>W2110590417
JAHBGE010000047
Alphaproteobacteria
Ancylobacter lacus VKM B-3280 [JAHBGE]
18983
18907
-
Arg
CCG
[ENA]
¡û
>W2110590459
JAHBGF010000026
Alphaproteobacteria
Ancylobacter sonchi VKM B-3145 [JAHBGF]
150475
150551
+
Arg
CCG
[ENA]
¡û
>C201154082
CP045144
Alphaproteobacteria
Ancylobacter sp. TS-1 [CP045144]
3427364
3427288
-
Arg
CCG
-
¡û
>W2110716483
JAJALI010000014
Alphaproteobacteria
Ancylobacter sp. Lp-2 [JAJALI]
51555
51479
-
Arg
CCG
[ENA]
¡û
>W10110045
ADBQ01000001
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
1018462
1018538
+
Arg
CCG
[ENA]
¡û
>C241129907
CP048630
Alphaproteobacteria
Ancylobacter pratisalsi DSM 102029 [CP048630]
1719091
1719167
+
Arg
CCG
-
¡û
>C241131982
CP048834
Alphaproteobacteria
Starkeya sp. ORNL1 [CP048834]
3248574
3248650
+
Arg
CCG
-
¡û
>W2310022835
BSFJ01000027
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [BSFJ]
5586
5662
+
Arg
CCG
[ENA]
¡û
>W2310022949
BSFM01000005
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [BSFM]
136960
137036
+
Arg
CCG
[ENA]
¡û
>C10112225
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
230058
229982
-
Arg
CCG
[Ensembl]
¡û
>W11112482
ADBQ01000001
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
1018462
1018538
+
Arg
CCG
[ENA]
¡û
>W1610754270
LNFH01000393
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
29317
29241
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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