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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309044 (95 seq.)
>W1710861104
LMDJ01000034
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
292143
292067
-
Gln
TTG
[ENA]
¡û
>W1710862081
LMEC01000025
Betaproteobacteria
Massilia sp. Root418 [LMEC]
300239
300163
-
Gln
TTG
[ENA]
¡û
>W1710871822
LMLM01000031
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
166301
166377
+
Gln
TTG
[ENA]
¡û
>W1711033366
LRHV01000034
Betaproteobacteria
Duganella sp. HH105 [LRHV]
52329
52405
+
Gln
TTG
[ENA]
¡û
>W1711046636
LROM01000130
Betaproteobacteria
Duganella phyllosphaerae [LROM]
17259
17183
-
Gln
TTG
[ENA]
¡û
>W1711046691
LRON01000018
Betaproteobacteria
Duganella sp. HH101 [LRON]
55012
55088
+
Gln
TTG
[ENA]
¡û
>W131050082
AMWD01000001
Betaproteobacteria
Janthinobacterium sp. HH01 [AMWD]
888472
888548
+
Gln
TTG
[ENA]
¡û
>W131160008
AQWD01000162
Betaproteobacteria
Oxalobacteraceae bacterium JGI 0001004-K23 [AQWD]
4403
4327
-
Gln
TTG
[ENA]
¡û
>W131176168
ARJV01000020
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
83780
83704
-
Gln
TTG
[ENA]
¡û
>W131179098
ARMC01000024
Betaproteobacteria
Oxalobacteraceae bacterium AB_14 [ARMC]
280398
280474
+
Gln
TTG
[ENA]
¡û
>WENV180018488
FSZM01000065
[FSZM] metagenome; soil
78
2
-
Gln
TTG
[ENA]
¡û
>WENV180033774
FTKL01152713
[FTKL] metagenome; soil
249
173
-
Gln
TTG
[ENA]
¡û
>WENV180035267
FTKT01057475
[FTKT] metagenome; soil
443
519
+
Gln
TTG
[ENA]
¡û
>WENV170558616
CXWL01081322
[CXWL] groundwater metagenome; biofilm material
7013
7089
+
Gln
TTG
[ENA]
¡û
>WENV170559115
CXWL01110740
[CXWL] groundwater metagenome; biofilm material
2340
2264
-
Gln
TTG
[ENA]
¡û
>WENV170559361
CXWL01120391
[CXWL] groundwater metagenome; biofilm material
8522
8446
-
Gln
TTG
[ENA]
¡û
>WENV170559444
CXWL01123844
[CXWL] groundwater metagenome; biofilm material
574
498
-
Gln
TTG
[ENA]
¡û
>C181102659
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
1011636
1011712
+
Gln
TTG
-
¡û
>C191138952
CP035311
Betaproteobacteria
Janthinobacterium sp. 17J80-10 [CP035311]
863008
862932
-
Gln
TTG
-
¡û
>W1911802864
QYUP01000124
Betaproteobacteria
Massilia sp. K1S02-61 [QYUP]
93093
93169
+
Gln
TTG
[ENA]
¡û
>W1911802906
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sp. K1S02-23 [QYUQ]
4302536
4302460
-
Gln
TTG
[ENA]
¡û
>W1810062370
PDOB01000024
Betaproteobacteria
Massilia psychrophila JCM 30813 [PDOB]
5041
4965
-
Gln
TTG
[ENA]
¡û
>W1810062438
PDOC01000009
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
75795
75871
+
Gln
TTG
[ENA]
¡û
>W1810068735
PDZP01000008
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
184308
184384
+
Gln
TTG
[ENA]
¡û
>W1810672459
QJTL01000002
Betaproteobacteria
Duganella sp. GV083 [QJTL]
941259
941335
+
Gln
TTG
[ENA]
¡û
>W1810677167
QKMN01000002
Betaproteobacteria
Duganella sp. GV053 [QKMN]
941259
941335
+
Gln
TTG
[ENA]
¡û
>W1810693403
QLLJ01000002
Betaproteobacteria
Duganella sp. GV066 [QLLJ]
941259
941335
+
Gln
TTG
[ENA]
¡û
>W1810694365
QLLZ01000002
Betaproteobacteria
Duganella sp. GV039 [QLLZ]
941259
941335
+
Gln
TTG
[ENA]
¡û
>W1810787971
QREC01000002
Betaproteobacteria
Duganella sp. GV023 [QREC]
269097
269021
-
Gln
TTG
[ENA]
¡û
>W1810885061
QUNB01000002
Betaproteobacteria
Duganella sp. GV032 [QUNB]
941844
941920
+
Gln
TTG
[ENA]
¡û
>W1810885180
QUND01000002
Betaproteobacteria
Duganella sp. GV046 [QUND]
941844
941920
+
Gln
TTG
[ENA]
¡û
>W1810885814
QUNP01000002
Betaproteobacteria
Duganella sp. GV038 [QUNP]
941844
941920
+
Gln
TTG
[ENA]
¡û
>W1810886071
QUNU01000003
Betaproteobacteria
Duganella sp. GV067 [QUNU]
421232
421308
+
Gln
TTG
[ENA]
¡û
>W1810908136
QVIL01000009
Betaproteobacteria
Duganella sp. BJB489 [QVIL]
206871
206795
-
Gln
TTG
[ENA]
¡û
>W1810908203
QVIM01000010
Betaproteobacteria
Duganella sp. BJB488 [QVIM]
105641
105717
+
Gln
TTG
[ENA]
¡û
>W1810908270
QVIN01000008
Betaproteobacteria
Duganella sp. BJB480 [QVIN]
206871
206795
-
Gln
TTG
[ENA]
¡û
>W1810908336
QVIO01000008
Betaproteobacteria
Duganella sp. BJB476 [QVIO]
73261
73337
+
Gln
TTG
[ENA]
¡û
>W1810908406
QVIP01000009
Betaproteobacteria
Duganella sp. BJB475 [QVIP]
290315
290239
-
Gln
TTG
[ENA]
¡û
>W2010450937
JAADJT010000001
Betaproteobacteria
Duganella sp. SAP-35 [JAADJT]
346843
346767
-
Gln
TTG
[ENA]
¡û
>W2010609427
JABMJJ010000009
Betaproteobacteria
Rugamonas sp. SG757 [JABMJJ]
69653
69729
+
Gln
TTG
[ENA]
¡û
>W2010630621
JABTBR010000045
Betaproteobacteria
Oxalobacteraceae bacterium BJB404 [JABTBR]
22182
22106
-
Gln
TTG
[ENA]
¡û
>W2010641376
JABWEF010000009
Betaproteobacteria
Duganella sp. BJB1802 [JABWEF]
30619
30543
-
Gln
TTG
[ENA]
¡û
>W2011344495
QYUP01000124
Betaproteobacteria
Massilia sp. K1S02-61 [QYUP]
93093
93169
+
Gln
TTG
[ENA]
¡û
>W2011344537
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sp. K1S02-23 [QYUQ]
4302536
4302460
-
Gln
TTG
[ENA]
¡û
>W2011404563
RCWV01000002
Betaproteobacteria
Duganella sp. GV089 [RCWV]
941259
941335
+
Gln
TTG
[ENA]
¡û
>W2011497232
RXLQ01000026
Betaproteobacteria
Massilia sp. SOD [RXLQ]
23238
23314
+
Gln
TTG
[ENA]
¡û
>W2012089073
VMEK01000006
Betaproteobacteria
Zoogloea ramigera ATCC 19544 [VMEK]
271714
271790
+
Gln
TTG
[ENA]
¡û
>W2012157023
VUYU01000005
Betaproteobacteria
Massilia sp. CCM 8692 [VUYU]
49259
49335
+
Gln
TTG
[ENA]
¡û
>W2012157322
VVIW01000004
Betaproteobacteria
Massilia sp. CCM 8693 [VVIW]
186313
186237
-
Gln
TTG
[ENA]
¡û
>W2012325795
WHIV01000004
Betaproteobacteria
Duganella sp. FT27W [WHIV]
290861
290785
-
Gln
TTG
[ENA]
¡û
>W2012326309
WHJF01000015
Betaproteobacteria
Massilia sp. CCM 8694 [WHJF]
42041
41965
-
Gln
TTG
[ENA]
¡û
>W2012326431
WHJG01000042
Betaproteobacteria
Massilia sp. CCM 8695 [WHJG]
30767
30691
-
Gln
TTG
[ENA]
¡û
>W2012326448
WHJH01000003
Betaproteobacteria
Massilia sp. CCM 8733 [WHJH]
77801
77877
+
Gln
TTG
[ENA]
¡û
>W2012326575
WHJI01000049
Betaproteobacteria
Massilia sp. CCM 8734 [WHJI]
20606
20682
+
Gln
TTG
[ENA]
¡û
>W2012330583
WHUF01000011
Betaproteobacteria
Rugamonas sp. FT103W [WHUF]
110170
110094
-
Gln
TTG
[ENA]
¡û
>W2012330638
WHUG01000013
Betaproteobacteria
Rugamonas sp. FT29W [WHUG]
116850
116774
-
Gln
TTG
[ENA]
¡û
>W2012469678
WWCO01000011
Betaproteobacteria
Duganella sp. FT94W [WWCO]
22357
22433
+
Gln
TTG
[ENA]
¡û
>W2012469764
WWCP01000029
Betaproteobacteria
Duganella sp. FT50W [WWCP]
4010
3934
-
Gln
TTG
[ENA]
¡û
>W2012469870
WWCR01000008
Betaproteobacteria
Duganella sp. FT134W [WWCR]
88103
88027
-
Gln
TTG
[ENA]
¡û
>W2012469958
WWCS01000008
Betaproteobacteria
Duganella pernnla FT109W [WWCS]
178315
178391
+
Gln
TTG
[ENA]
¡û
>W2012470071
WWCT01000024
Betaproteobacteria
Duganella levis CY42W [WWCT]
41977
42053
+
Gln
TTG
[ENA]
¡û
>W2012470099
WWCU01000005
Betaproteobacteria
Massilia aquatica FT127W [WWCU]
62527
62451
-
Gln
TTG
[ENA]
¡û
>W2012470199
WWCV01000028
Betaproteobacteria
Rugamonas sp. FT107W [WWCV]
53210
53286
+
Gln
TTG
[ENA]
¡û
>W2012470266
WWCW01000023
Betaproteobacteria
Rugamonas sp. FT82W [WWCW]
8765
8689
-
Gln
TTG
[ENA]
¡û
>W2012470345
WWCX01000024
Betaproteobacteria
Rugamonas sp. FT81W [WWCX]
38737
38661
-
Gln
TTG
[ENA]
¡û
>W2110021001
BMED01000003
Betaproteobacteria
Undibacterium terreum CGMCC 1.10998 [BMED]
98304
98228
-
Gln
TTG
[ENA]
¡û
>W2110025623
BMHS01000019
Betaproteobacteria
Massilia psychrophila CGMCC 1.15196 [BMHS]
45516
45440
-
Gln
TTG
[ENA]
¡û
>W2110428671
JAEMNU010000037
Betaproteobacteria
Rugamonas sp. CCM 8940 [JAEMNU]
262744
262820
+
Gln
TTG
[ENA]
¡û
>W2110463029
JAFBIL020000001
Betaproteobacteria
Massilia sp. R798 [JAFBIL]
238664
238588
-
Gln
TTG
[ENA]
¡û
>W2110500212
JAFICD010000004
Betaproteobacteria
Duganella sp. 1411 [JAFICD]
343645
343569
-
Gln
TTG
[ENA]
¡û
>W2110645239
JAHTGR010000009
Betaproteobacteria
Duganella sp. HSC-15S17 [JAHTGR]
291858
291934
+
Gln
TTG
[ENA]
¡û
>C211199748
CP065053
Betaproteobacteria
Massilia sp. CCM 8941 [CP065053]
2360174
2360250
+
Gln
TTG
-
¡û
>C211377090
CP080378
Betaproteobacteria
Massilia sp. PAMC28688 [CP080378]
1380033
1379957
-
Gln
TTG
-
¡û
>C231096018
CP063361
Betaproteobacteria
Massilia violaceinigra sipir [CP063361]
3080186
3080262
+
Gln
TTG
-
¡û
>C231227179
CP086370
Betaproteobacteria
Massilia sp. HC52 [CP086370]
980600
980676
+
Gln
TTG
-
¡û
>C231247570
CP087969
Betaproteobacteria
Massilia sp. H-1 [CP087969]
2275513
2275437
-
Gln
TTG
-
¡û
>C231247622
CP087970
Betaproteobacteria
Massilia sp. B-10 [CP087970]
2274310
2274234
-
Gln
TTG
-
¡û
>C231416616
CP099650
Betaproteobacteria
Oxalobacteraceae bacterium OTU3CAMAD1 [CP099650]
978100
978176
+
Gln
TTG
-
¡û
>C231416695
CP099651
Betaproteobacteria
Oxalobacteraceae bacterium OTU3REALA1 [CP099651]
1015737
1015813
+
Gln
TTG
-
¡û
>C231416774
CP099652
Betaproteobacteria
Oxalobacteraceae bacterium OTU3CINTB1 [CP099652]
970626
970702
+
Gln
TTG
-
¡û
>C231648740
CP122407
Betaproteobacteria
Rugamonas sp. DEMB1 [CP122407]
5855278
5855202
-
Gln
TTG
-
¡û
>C241151528
CP051684
Betaproteobacteria
Duganella dendranthematis AF9R3 [CP051684]
2956751
2956827
+
Gln
TTG
-
¡û
>C241354700
CP140152
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [CP140152]
5463122
5463046
-
Gln
TTG
-
¡û
>W1610093116
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
1365690
1365766
+
Gln
TTG
[ENA]
¡û
>W1610163410
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
1365690
1365766
+
Gln
TTG
[ENA]
¡û
>W1610723450
LMDJ01000034
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
292143
292067
-
Gln
TTG
[ENA]
¡û
>W1610724427
LMEC01000025
Betaproteobacteria
Massilia sp. Root418 [LMEC]
300239
300163
-
Gln
TTG
[ENA]
¡û
>W1610734168
LMLM01000031
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
166301
166377
+
Gln
TTG
[ENA]
¡û
>W1710096324
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
1365690
1365766
+
Gln
TTG
[ENA]
¡û
>W1710165077
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
1365690
1365766
+
Gln
TTG
[ENA]
¡û
>W1710515887
FNCD01000017
Betaproteobacteria
Duganella sp. OV458 [FNCD]
4184
4108
-
Gln
TTG
[ENA]
¡û
>W1710519298
FNEQ01000004
Betaproteobacteria
Duganella sp. OV510 [FNEQ]
3953
3877
-
Gln
TTG
[ENA]
¡û
>W1710547613
FODC01000008
Betaproteobacteria
Duganella sp. CF517 [FODC]
297737
297813
+
Gln
TTG
[ENA]
¡û
>W1710568831
FOTW01000029
Betaproteobacteria
Rugamonas rubra [FOTW]
81393
81469
+
Gln
TTG
[ENA]
¡û
>W1710586020
FQWU01000005
Betaproteobacteria
Massilia sp. CF038 [FQWU]
69403
69479
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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