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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309129 (42 seq.)
>W1710931155
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
6788
6864
+
Met
CAT
[ENA]
¡û
>W1710931159
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
7187
7263
+
Met
CAT
[ENA]
¡û
>W1710931162
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
7461
7537
+
Met
CAT
[ENA]
¡û
>W1710931183
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
20403
20327
-
Met
CAT
[ENA]
¡û
>W1711488989
MKIE01000005
Bacillota
Andreesenia angusta [MKIE]
175280
175204
-
Met
CAT
[ENA]
¡û
>W1711488992
MKIE01000005
Bacillota
Andreesenia angusta [MKIE]
174987
174911
-
Met
CAT
[ENA]
¡û
>W1711489031
MKIE01000037
Bacillota
Andreesenia angusta [MKIE]
339
415
+
Met
CAT
[ENA]
¡û
>WENV180634912
OCRB01159303
[OCRB] metagenome; diffuse fluid
79
155
+
Ile2
CAT
[ENA]
¡û
>WENV170662041
JXWV01181126
[JXWV] soil metagenome; rice field; organic FYM Plot
344
420
+
Met
CAT
[ENA]
¡û
>WENV170677612
LDZT01007416
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1258
1334
+
Met
CAT
[ENA]
¡û
>WENV170678574
LDZU01002542
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1348
1424
+
Met
CAT
[ENA]
¡û
>W141557811
JHVL01000004
Bacillota
Clostridiisalibacter paucivorans DSM 22131 [JHVL]
139215
139139
-
Met
CAT
[ENA]
¡û
>W141619941
JJMM01000021
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
5620
5544
-
Met
CAT
[ENA]
¡û
>W141619964
JJMM01000023
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
108392
108316
-
Met
CAT
[ENA]
¡û
>W141619967
JJMM01000023
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
108050
107974
-
Met
CAT
[ENA]
¡û
>W1810000021
BDQY01000021
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
386
462
+
Met
CAT
[ENA]
¡û
>W1810000028
BDQY01000045
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
5598
5522
-
Met
CAT
[ENA]
¡û
>W1810000039
BDQY01000065
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
382
306
-
Met
CAT
[ENA]
¡û
>W1810000064
BDQY01000086
Bacillota
Tepidibacter mesophilus JCM 16806 [BDQY]
292
216
-
Met
CAT
[ENA]
¡û
>W2110539724
JAGGLI010000078
Bacillota
Acetoanaerobium pronyense DSM 27512 [JAGGLI]
1055
1131
+
Ile2
CAT
[ENA]
¡û
>C231632648
CP120733
Bacillota
Tepidibacter sp. SWIR-1 [CP120733]
3950151
3950227
+
Ile2
CAT
-
¡û
>C231632669
CP120733
Bacillota
Tepidibacter sp. SWIR-1 [CP120733]
3952036
3952112
+
Ile2
CAT
-
¡û
>C231632694
CP120733
Bacillota
Tepidibacter sp. SWIR-1 [CP120733]
4046095
4046171
+
Ile2
CAT
-
¡û
>C231632698
CP120733
Bacillota
Tepidibacter sp. SWIR-1 [CP120733]
4046458
4046534
+
Ile2
CAT
-
¡û
>C231632725
CP120733
Bacillota
Tepidibacter sp. SWIR-1 [CP120733]
3369402
3369326
-
Ile2
CAT
-
¡û
>C231654528
OW235315
Bacillota
Tepidibacter sp. 8C15b [OW235315]
324406
324482
+
Ile2
CAT
-
¡û
>C231654564
OW235315
Bacillota
Tepidibacter sp. 8C15b [OW235315]
3459919
3459843
-
Ile2
CAT
-
¡û
>C231654585
OW235315
Bacillota
Tepidibacter sp. 8C15b [OW235315]
3458039
3457963
-
Ile2
CAT
-
¡û
>C231654610
OW235315
Bacillota
Tepidibacter sp. 8C15b [OW235315]
3368667
3368591
-
Ile2
CAT
-
¡û
>C231654614
OW235315
Bacillota
Tepidibacter sp. 8C15b [OW235315]
3368315
3368239
-
Ile2
CAT
-
¡û
>C231654628
OW235315
Bacillota
Tepidibacter sp. 8C15b [OW235315]
3100463
3100387
-
Ile2
CAT
-
¡û
>W1610613903
LGGM01000008
Bacillota
Clostridiales bacterium 38_11 [LGGM]
1258
1334
+
Met
CAT
[ENA]
¡û
>W1610788697
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
6788
6864
+
Met
CAT
[ENA]
¡û
>W1610788701
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
7187
7263
+
Met
CAT
[ENA]
¡û
>W1610788704
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
7461
7537
+
Met
CAT
[ENA]
¡û
>W1610788725
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
20403
20327
-
Met
CAT
[ENA]
¡û
>W1710586607
FQXI01000005
Bacillota
Anaerosphaera aminiphila DSM 21120 [FQXI]
118280
118204
-
Met
CAT
[ENA]
¡û
>W1710589450
FRAE01000021
Bacillota
Tepidibacter formicigenes DSM 15518 [FRAE]
41217
41141
-
Met
CAT
[ENA]
¡û
>W1710594540
FSRH01000025
Bacillota
Peptoclostridium litorale DSM 5388 [FSRH]
7619
7543
-
Met
CAT
[ENA]
¡û
>W1710594557
FSRH01000033
Bacillota
Peptoclostridium litorale DSM 5388 [FSRH]
768
692
-
Met
CAT
[ENA]
¡û
>W1710594560
FSRH01000033
Bacillota
Peptoclostridium litorale DSM 5388 [FSRH]
426
350
-
Met
CAT
[ENA]
¡û
>W1710734986
LGGM01000008
Bacillota
Clostridiales bacterium 38_11 [LGGM]
1258
1334
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK