This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309243 (8 seq.)
>WENV180074058
MPMA02117940
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
983
910
-
Glu
TTC
[ENA]
¡û
>WENV180079056
MPMB02140667
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
301
374
+
Glu
TTC
[ENA]
¡û
>WENV180089755
MPMF02101937
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
361
288
-
Glu
TTC
[ENA]
¡û
>WENV180295736
OBIZ01276423
[OBIZ] soil metagenome; soil
138
66
-
Glu
TTC
[ENA]
¡û
>WENV180352947
OBLQ010454381
[OBLQ] soil metagenome; soil
141
67
-
Glu
TTC
[ENA]
¡û
>WENV180390888
OBPL01072935
[OBPL] marine metagenome; Sterivex filter
300
227
-
Glu
TTC
[ENA]
¡û
>WENV180590227
OCOS01164040
[OCOS] marine metagenome; Sterile flask
175
102
-
Glu
TTC
[ENA]
¡û
>WENV183806211
PVBE011094708
[PVBE] marine metagenome; water
4949
5022
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK