This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309378 (66 seq.)
>WENV180081383
MPMC02112150
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
147
222
+
Ala
TGC
[ENA]
¡û
>WENV180304753
OBJI01367949
[OBJI] soil metagenome; soil
92
20
-
Ala
TGC
[ENA]
¡û
>WENV181190184
OEOF01568473
[OEOF] activated sludge metagenome; Activated Sludge
88
161
+
Ala
TGC
[ENA]
¡û
>WENV181233338
OFES01012959
[OFES] coral metagenome; NA
1621
1547
-
Ala
TGC
[ENA]
¡û
>WENV170396222
CEUC01224438
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
14
89
+
Ala
TGC
[ENA]
¡û
>C191013240
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
374923
374996
+
Ala
TGC
-
¡û
>C191013276
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
8771291
8771218
-
Ala
TGC
-
¡û
>C191013281
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
5647934
5647861
-
Ala
TGC
-
¡û
>C191013306
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
371452
371525
+
Ala
TGC
-
¡û
>C191013341
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
9247471
9247398
-
Ala
TGC
-
¡û
>C191013371
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
373495
373568
+
Ala
TGC
-
¡û
>C191013406
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
9136000
9135927
-
Ala
TGC
-
¡û
>C191013436
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
373495
373568
+
Ala
TGC
-
¡û
>C191013471
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
9136069
9135996
-
Ala
TGC
-
¡û
>W141695219
JMCB01000038
Myxococcota
Hyalangium minutum [JMCB]
3646
3571
-
Ala
TGC
[ENA]
¡û
>W141695283
JMCC01000195
Myxococcota
Enhygromyxa salina [JMCC]
3646
3571
-
Ala
TGC
[ENA]
¡û
>W2010103417
BJXR01000089
Myxococcota
Myxococcus fulvus NBRC 100333 [BJXR]
3633
3560
-
Ala
TGC
[ENA]
¡û
>W2010451802
JAAEAG010000595
Myxococcota
Myxococcus sp. CA018 [JAAEAG]
374
301
-
Ala
TGC
[ENA]
¡û
>W2010451862
JAAEAH010000184
Myxococcota
Myxococcus sp. CA023 [JAAEAH]
374
301
-
Ala
TGC
[ENA]
¡û
>W2010489259
JAAIXY010000049
Myxococcota
Myxococcus sp. AB053B [JAAIXY]
3657
3584
-
Ala
TGC
[ENA]
¡û
>W2010489333
JAAIXZ010000070
Myxococcota
Pyxidicoccus sp. AB060A [JAAIXZ]
371
298
-
Ala
TGC
[ENA]
¡û
>W2010489335
JAAIXZ010000079
Myxococcota
Pyxidicoccus sp. AB060A [JAAIXZ]
204
131
-
Ala
TGC
[ENA]
¡û
>W2010489406
JAAIYA010000124
Myxococcota
Pyxidicoccus sp. CA032A [JAAIYA]
387
460
+
Ala
TGC
[ENA]
¡û
>W2010587814
JABBJJ010000764
Myxococcota
Pyxidicoccus fallax DSM 14698 [JABBJJ]
225
152
-
Ala
TGC
[ENA]
¡û
>W2010599249
JABFNQ010000176
Myxococcota
Myxococcus xanthus AB023 [JABFNQ]
310
237
-
Ala
TGC
[ENA]
¡û
>W2010599309
JABFNR010000264
Myxococcota
Myxococcus xanthus CA029 [JABFNR]
374
301
-
Ala
TGC
[ENA]
¡û
>W2010599369
JABFNS010000297
Myxococcota
Myxococcus xanthus AM003 [JABFNS]
396
323
-
Ala
TGC
[ENA]
¡û
>W2010599428
JABFNT010000321
Myxococcota
Myxococcus xanthus AM005 [JABFNT]
190
117
-
Ala
TGC
[ENA]
¡û
>W2010636033
JABUMS010000049
Myxococcota
Myxococcus sp. CA051A [JABUMS]
3595
3522
-
Ala
TGC
[ENA]
¡û
>W2010643614
JABXEM010000426
Myxococcota
Myxococcus sp. AM011 [JABXEM]
3822
3749
-
Ala
TGC
[ENA]
¡û
>W2010643675
JABXEO010000233
Myxococcota
Myxococcus sp. AM010 [JABXEO]
201
274
+
Ala
TGC
[ENA]
¡û
>W2011679053
SRLU01000344
Myxococcota
Myxococcus sp. CA006 [SRLU]
392
465
+
Ala
TGC
[ENA]
¡û
>W2011679112
SRLV01000204
Myxococcota
Myxococcus sp. CA005 [SRLV]
310
237
-
Ala
TGC
[ENA]
¡û
>W2011679238
SRLX01000341
Myxococcota
Myxococcus sp. AB025A [SRLX]
374
301
-
Ala
TGC
[ENA]
¡û
>W2011679297
SRLY01000313
Myxococcota
Myxococcus sp. AB024B [SRLY]
374
301
-
Ala
TGC
[ENA]
¡û
>W2012031454
VHLA01000244
Myxococcota
Myxococcus sp. CA010 [VHLA]
374
301
-
Ala
TGC
[ENA]
¡û
>W2012031513
VHLB01000211
Myxococcota
Myxococcus sp. AB056 [VHLB]
357
284
-
Ala
TGC
[ENA]
¡û
>W2012037779
VIFM01000499
Myxococcota
Myxococcus sp. AM401 [VIFM]
2103
2176
+
Ala
TGC
[ENA]
¡û
>W2012066793
VJZZ01000029
Myxococcota
Aggregicoccus sp. 17bor-14 [VJZZ]
3823
3750
-
Ala
TGC
[ENA]
¡û
>W2012232376
WBSK01000247
Myxococcota
Myxococcus sp. CA027 [WBSK]
374
301
-
Ala
TGC
[ENA]
¡û
>ENV09000532
ABSO01014520
Freshwater sediment metagenome lwFormate_C1
506
431
-
Ala
TGC
[ENA]
¡û
>W2110330481
JADKXZ010000029
Myxococcota
Simulacricoccus sp. 17bor-14 [JADKXZ]
3823
3750
-
Ala
TGC
[ENA]
¡û
>W2110659333
JAHXBG010000053
Myxococcota
Cystobacter gracilis DSM 14753 [JAHXBG]
2437
2510
+
Ala
TGC
[ENA]
¡û
>W2110659382
JAHXBH010000062
Myxococcota
Stigmatella hybrida DSM 14722 [JAHXBH]
3659
3586
-
Ala
TGC
[ENA]
¡û
>W2110692524
JAIQDF010000046
Myxococcota
Myxococcus sp. AS-1-15 [JAIQDF]
3625
3552
-
Ala
TGC
[ENA]
¡û
>W2110692661
JAIQDH010000052
Myxococcota
Myxococcus sp. XM-1-1-1 [JAIQDH]
3622
3549
-
Ala
TGC
[ENA]
¡û
>C211205150
CP065375
Myxococcota
Myxococcus xanthus DK1622::pDPO-Mxn116-Pvan-Tpase [CP065375]
445966
446039
+
Ala
TGC
-
¡û
>C211205186
CP065375
Myxococcota
Myxococcus xanthus DK1622::pDPO-Mxn116-Pvan-Tpase [CP065375]
9026097
9026024
-
Ala
TGC
-
¡û
>C211240332
CP068048
Myxococcota
Myxococcus xanthus R31 [CP068048]
375766
375839
+
Ala
TGC
-
¡û
>C211240369
CP068048
Myxococcota
Myxococcus xanthus R31 [CP068048]
9063963
9063890
-
Ala
TGC
-
¡û
>C211380113
CP080534
Myxococcota
Myxococcus xanthus ATCC 27925 [CP080534]
378252
378325
+
Ala
TGC
-
¡û
>C211380149
CP080534
Myxococcota
Myxococcus xanthus ATCC 27925 [CP080534]
9171293
9171220
-
Ala
TGC
-
¡û
>C231166990
CP080538
Myxococcota
Myxococcus xanthus DZ2 [CP080538]
316145
316218
+
Ala
TGC
-
¡û
>C231167016
CP080538
Myxococcota
Myxococcus xanthus DZ2 [CP080538]
9109119
9109046
-
Ala
TGC
-
¡û
>C231554056
CP113950
Myxococcota
Myxococcus sp. NMCA1 [CP113950]
350905
350978
+
Ala
TGC
-
¡û
>C231554091
CP113950
Myxococcota
Myxococcus sp. NMCA1 [CP113950]
9297659
9297586
-
Ala
TGC
-
¡û
>C241181400
CP077414
Myxococcota
Myxococcus sp. SDU36 [CP077414]
6963988
6964061
+
Ala
TGC
-
¡û
>C241181418
CP077414
Myxococcota
Myxococcus sp. SDU36 [CP077414]
6372807
6372734
-
Ala
TGC
-
¡û
>C11119103
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
577112
577185
+
Ala
TGC
[Ensembl]
¡û
>C11119132
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
6868906
6868833
-
Ala
TGC
[Ensembl]
¡û
>W121102907
AKXT01000121
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
179
106
-
Ala
TGC
[ENA]
¡û
>W121103084
AKYI01000004
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
3853
3780
-
Ala
TGC
[ENA]
¡û
>ENV002154
AY933945
Environmental sample from ENV division of INSDC
165
242
+
Ala
TGC
[ENA]
>W1710544144
FOAP01000045
Myxococcota
Stigmatella aurantiaca [FOAP]
2566
2639
+
Ala
TGC
[ENA]
¡û
>W1710554019
FOIB01000024
Myxococcota
Myxococcus fulvus [FOIB]
3633
3558
-
Ala
TGC
[ENA]
¡û
>W1710554377
FOIJ01000037
Myxococcota
Stigmatella erecta [FOIJ]
3662
3589
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK