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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309421 (89 seq.)
>W1711621247
MPCX01000008
Bacteroidota
Lacinutrix sp. MedPE-SW [MPCX]
1134
1209
+
Gly
TCC
[ENA]
¡û
>W1711621257
MPCX01000015
Bacteroidota
Lacinutrix sp. MedPE-SW [MPCX]
18840
18765
-
Gly
TCC
[ENA]
¡û
>W131184746
ARTD01000003
Bacteroidota
Flavobacterium sp. SCGC AAA160-P02 [ARTD]
2156
2231
+
Gly
TCC
[ENA]
¡û
>W131184773
ARTD01000024
Bacteroidota
Flavobacterium sp. SCGC AAA160-P02 [ARTD]
25861
25936
+
Gly
TCC
[ENA]
¡û
>W131224963
AUDE01000029
Bacteroidota
Psychroserpens burtonensis DSM 12212 [AUDE]
40160
40235
+
Gly
TCC
[ENA]
¡û
>W131224967
AUDE01000033
Bacteroidota
Psychroserpens burtonensis DSM 12212 [AUDE]
16889
16814
-
Gly
TCC
[ENA]
¡û
>WENV180107028
OAPF01022488
[OAPF] marine metagenome; ENVO:00002010
381
306
-
Gly
TCC
[ENA]
¢þ
>WENV180356997
OBNM01004368
[OBNM] marine metagenome; none
270
343
+
Gly
TCC
[ENA]
¢þ
>WENV180376393
OBOM01004799
[OBOM] marine metagenome; Seawater
1067
994
-
Gly
TCC
[ENA]
¢þ
>WENV180380772
OBOR01015909
[OBOR] marine metagenome; ENVO 00002227
253
326
+
Gly
TCC
[ENA]
¢þ
>WENV181008317
ODWE01003917
[ODWE] human metagenome; G_DNA_Supragingival plaque
6072
5999
-
Gly
TCC
[ENA]
¢þ
>WENV181163003
OEIO01060390
[OEIO] marine metagenome; sea ice
388
461
+
Gly
TCC
[ENA]
¢þ
>WENV181163034
OEIO01067288
[OEIO] marine metagenome; sea ice
72
-1
-
Gly
TCC
[ENA]
¢þ
>WENV181306698
OFIM01000837
[OFIM] marine metagenome; seawater
906
833
-
Gly
TCC
[ENA]
¢þ
>WENV181322133
OFKP01009753
[OFKP] marine metagenome; sea ice
559
632
+
Gly
TCC
[ENA]
¢þ
>WENV181323280
OFKX01003417
[OFKX] marine metagenome; seawater
759
832
+
Gly
TCC
[ENA]
¢þ
>WENV181392548
OFRW01078508
[OFRW] seawater metagenome; seawater
428
355
-
Gly
TCC
[ENA]
¢þ
>WENV182548302
OJBV01013474
[OJBV] seawater metagenome; Sea water
845
918
+
Gly
TCC
[ENA]
¢þ
>WENV182548844
OJBX01000448
[OJBX] seawater metagenome; Sea water
3617
3690
+
Gly
TCC
[ENA]
¢þ
>WENV182548855
OJBX01000626
[OJBX] seawater metagenome; Sea water
971
1044
+
Gly
TCC
[ENA]
¢þ
>WENV182551025
OJCB01006860
[OJCB] seawater metagenome; Sea water
2153
2226
+
Gly
TCC
[ENA]
¢þ
>WENV182552745
OJCO01002645
[OJCO] seawater metagenome; Sea water
484
411
-
Gly
TCC
[ENA]
¢þ
>WENV182553379
OJCR01002819
[OJCR] seawater metagenome; Sea water
2089
2016
-
Gly
TCC
[ENA]
¢þ
>WENV182554982
OJCY01000238
[OJCY] seawater metagenome; Sea water
1903
1976
+
Gly
TCC
[ENA]
¢þ
>WENV182555114
OJCY01002727
[OJCY] seawater metagenome; Sea water
971
1044
+
Gly
TCC
[ENA]
¢þ
>WENV182558008
OJDL01001718
[OJDL] seawater metagenome; Sea water
4429
4502
+
Gly
TCC
[ENA]
¢þ
>WENV182559331
OJDO01018879
[OJDO] seawater metagenome; Sea water
509
582
+
Gly
TCC
[ENA]
¢þ
>WENV182560242
OJDT01014690
[OJDT] seawater metagenome; Sea water
249
322
+
Gly
TCC
[ENA]
¢þ
>WENV182562060
OJDY01003118
[OJDY] seawater metagenome; Sea water
958
885
-
Gly
TCC
[ENA]
¢þ
>WENV182569184
OJEY01001809
[OJEY] seawater metagenome; Sea water
1286
1359
+
Gly
TCC
[ENA]
¢þ
>WENV182571490
OJFK01000130
[OJFK] seawater metagenome; Sea water
4552
4625
+
Gly
TCC
[ENA]
¢þ
>WENV182572053
OJFL01000184
[OJFL] seawater metagenome; Sea water
25509
25582
+
Gly
TCC
[ENA]
¢þ
>WENV182575374
OJFU01009438
[OJFU] seawater metagenome; Sea water
482
555
+
Gly
TCC
[ENA]
¢þ
>WENV182576255
OJFX01006618
[OJFX] seawater metagenome; Sea water
1349
1276
-
Gly
TCC
[ENA]
¢þ
>WENV182580126
OJGU01004867
[OJGU] seawater metagenome; Sea water
582
655
+
Gly
TCC
[ENA]
¢þ
>WENV182580697
OJGW01007885
[OJGW] seawater metagenome; Sea water
1611
1684
+
Gly
TCC
[ENA]
¢þ
>WENV182582201
OJHA01000798
[OJHA] seawater metagenome; Sea water
2565
2492
-
Gly
TCC
[ENA]
¢þ
>WENV182582574
OJHB01001793
[OJHB] seawater metagenome; Sea water
1348
1275
-
Gly
TCC
[ENA]
¢þ
>WENV182586496
OJHK01000683
[OJHK] seawater metagenome; Sea water
9251
9324
+
Gly
TCC
[ENA]
¢þ
>WENV182590536
OJII01013176
[OJII] seawater metagenome; Sea water
344
417
+
Gly
TCC
[ENA]
¢þ
>WENV182590691
OJIK01000025
[OJIK] seawater metagenome; Sea water
8872
8945
+
Gly
TCC
[ENA]
¢þ
>WENV182591261
OJIL01006707
[OJIL] seawater metagenome; Sea water
128
201
+
Gly
TCC
[ENA]
¢þ
>WENV182591269
OJIL01007718
[OJIL] seawater metagenome; Sea water
1222
1149
-
Gly
TCC
[ENA]
¢þ
>WENV182591720
OJIO01002797
[OJIO] seawater metagenome; Sea water
5281
5354
+
Gly
TCC
[ENA]
¢þ
>W141276395
JADT01000014
Bacteroidota
Olleya sp. VCSM12 [JADT]
35147
35072
-
Gly
TCC
[ENA]
¡û
>WENV183056140
OLHI01000261
[OLHI] seawater metagenome; Sea water
11102
11029
-
Gly
TCC
[ENA]
¢þ
>WENV183059314
OLHU01000592
[OLHU] seawater metagenome; Sea water
2414
2341
-
Gly
TCC
[ENA]
¢þ
>WENV183060629
OLHY01000873
[OLHY] seawater metagenome; Sea water
1730
1657
-
Gly
TCC
[ENA]
¢þ
>WENV183060818
OLHY01006563
[OLHY] seawater metagenome; Sea water
403
330
-
Gly
TCC
[ENA]
¢þ
>WENV183062157
OLID01000196
[OLID] seawater metagenome; Sea water
22230
22303
+
Gly
TCC
[ENA]
¢þ
>WENV183062228
OLID01000784
[OLID] seawater metagenome; Sea water
10139
10066
-
Gly
TCC
[ENA]
¢þ
>WENV183064852
OLII01001464
[OLII] seawater metagenome; Sea water
2080
2153
+
Gly
TCC
[ENA]
¢þ
>WENV183617722
OOEG01061639
[OOEG] marine metagenome; sea ice
121
194
+
Gly
TCC
[ENA]
¢þ
>WENV183623792
OOGA01084436
[OOGA] marine metagenome; sea ice
237
164
-
Gly
TCC
[ENA]
¢þ
>WENV183625481
OOGF01041196
[OOGF] marine metagenome; seawater
133
206
+
Gly
TCC
[ENA]
¢þ
>WENV183625482
OOGF01041196
[OOGF] marine metagenome; seawater
247
320
+
Gly
TCC
[ENA]
¢þ
>WENV183625483
OOGF01041196
[OOGF] marine metagenome; seawater
360
433
+
Gly
TCC
[ENA]
¢þ
>WENV183625825
OOGG01044637
[OOGG] marine metagenome; sea ice
177
250
+
Gly
TCC
[ENA]
¢þ
>WENV183627277
OOGK01082833
[OOGK] marine metagenome; seawater
428
355
-
Gly
TCC
[ENA]
¢þ
>WENV183629077
OOGP01003227
[OOGP] marine metagenome; seawater
248
321
+
Gly
TCC
[ENA]
¢þ
>WENV170274244
CERM01005871
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
354
279
-
Gly
TCC
[ENA]
¢þ
>WENV170274553
CERM01024463
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
184
259
+
Gly
TCC
[ENA]
¢þ
>WENV170315504
CESO01131780
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
727
802
+
Gly
TCC
[ENA]
¢þ
>WENV170326479
CESU01003473
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
103
178
+
Gly
TCC
[ENA]
¢þ
>WENV170704937
LLEN01018711
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
122
47
-
Gly
TCC
[ENA]
¢þ
>WENV170783411
MAAC01016693
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
5497
5422
-
Gly
TCC
[ENA]
¢þ
>WENV170783837
MAAC01019213
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
211830
211755
-
Gly
TCC
[ENA]
¢þ
>WENV170858133
MDTB01018113
[MDTB] marine metagenome; seawater
2783
2710
-
Gly
TCC
[ENA]
¢þ
>C181113348
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
27534
27461
-
Gly
TCC
-
¡û
>C181113352
CP025118
Bacteroidota
Lacinutrix sp. Bg11-31 [CP025118]
259655
259728
+
Gly
TCC
-
¡û
>C181113370
CP025118
Bacteroidota
Lacinutrix sp. Bg11-31 [CP025118]
3503604
3503677
+
Gly
TCC
-
¡û
>C181202825
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
1621505
1621432
-
Gly
TCC
-
¡û
>C191018087
CP020822
Bacteroidota
Tenacibaculum maritimum TM-KORJJ [CP020822]
1867992
1868065
+
Gly
TCC
-
¡û
>C191166154
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
2260142
2260215
+
Gly
TCC
-
¡û
>W1910693663
MDGO01000009
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
29124
29051
-
Gly
TCC
[ENA]
¡û
>W1910785811
MQVY01000006
Bacteroidota
Tenacibaculum sp. SG-28 [MQVY]
5116
5043
-
Gly
TCC
[ENA]
¡û
>W1810063434
PDUU01000001
Bacteroidota
Tenacibaculum discolor 4G03 [PDUU]
179545
179618
+
Gly
TCC
[ENA]
¡û
>W1810685958
QKZR01000002
Bacteroidota
Nonlabens dokdonensis DSM 17205 [QKZR]
457578
457651
+
Gly
TCC
[ENA]
¡û
>W1810693706
QLLO01000005
Bacteroidota
Olleya aquimaris DSM 24464 [QLLO]
215616
215543
-
Gly
TCC
[ENA]
¡û
>W1810885989
QUNS01000003
Bacteroidota
Tenacibaculum gallaicum DSM 18841 [QUNS]
382546
382619
+
Gly
TCC
[ENA]
¡û
>ENV09003969
ADIF01004328
Marine metagenome apSum_C1
629
554
-
Gly
TCC
[ENA]
¡û
>W1511432812
JUGU01000001
Bacteroidota
Psychroserpens sp. Hel_I_66 [JUGU]
21720
21795
+
Gly
TCC
[ENA]
¡û
>W11152630
AEYR01000006
Bacteroidota
Lacinutrix sp. 5H-3-7-4 5H-3-7-4 [AEYR]
19739
19664
-
Gly
TCC
[ENA]
¡û
>W11152634
AEYR01000008
Bacteroidota
Lacinutrix sp. 5H-3-7-4 5H-3-7-4 [AEYR]
145172
145099
-
Gly
TCC
[ENA]
¡û
>C131001090
CP001397
Bacteroidota
Nonlabens dokdonensis DSW-6 [CP001397]
2246967
2247042
+
Gly
TCC
[Ensembl]
¡û
>W1610632941
LIQG01000027
Bacteroidota
Lacinutrix mariniflava [LIQG]
11985
12060
+
Gly
TCC
[ENA]
¡û
>W1610632950
LIQG01000027
Bacteroidota
Lacinutrix mariniflava [LIQG]
319258
319333
+
Gly
TCC
[ENA]
¡û
>W1710767373
LIQG01000027
Bacteroidota
Lacinutrix mariniflava [LIQG]
11985
12060
+
Gly
TCC
[ENA]
¡û
>W1710767382
LIQG01000027
Bacteroidota
Lacinutrix mariniflava [LIQG]
319258
319333
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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