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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309421 (10 seq.)
>WENV180049072
MPLU02032206
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
1097
1025
-
Lys
TTT
[ENA]
¡û
>WENV180057167
MPLW02083305
[MPLW] marine metagenome; 110 m water sample filtered on 0.2 um supor filter
2229
2301
+
Lys
TTT
[ENA]
¡û
>WENV180059506
MPLX02115311
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
277
349
+
Lys
TTT
[ENA]
¡û
>WENV180064425
MPLX02416185
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
510
582
+
Lys
TTT
[ENA]
¡û
>WENV180066292
MPLY02122017
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
952
880
-
Lys
TTT
[ENA]
¡û
>WENV180082101
MPMC02184977
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
866
794
-
Lys
TTT
[ENA]
¡û
>WENV180083238
MPMD02030105
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
670
742
+
Lys
TTT
[ENA]
¡û
>WENV180083251
MPMD02032005
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
2143
2215
+
Lys
TTT
[ENA]
¡û
>WENV180093143
MPMF02302937
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
121
193
+
Lys
TTT
[ENA]
¡û
>WENV183803416
PVBE010842972
[PVBE] marine metagenome; water
147
75
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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