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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309581 (8 seq.)
>WENV180095958
MTBK01099869
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
70628
70703
+
Pro
TGG
[ENA]
¡û
>WENV180097564
MTBK01196603
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
3335
3410
+
Pro
TGG
[ENA]
¡û
>WENV180099053
MTBK01284104
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
9227
9152
-
Pro
TGG
[ENA]
¡û
>WENV170686766
LFRM01162711
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
518
593
+
Pro
TGG
[ENA]
¡û
>WENV170721990
LSQX01212006
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
18439
18364
-
Pro
TGG
[ENA]
¡û
>WENV170722527
LSQX01232699
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9033
8958
-
Pro
TGG
[ENA]
¡û
>WENV170967612
MTKW01002422
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
338
263
-
Pro
TGG
[ENA]
¡û
>WENV170968595
MTKW01011845
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
841
916
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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