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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309610 (81 seq.)
>W1710985848
LPTQ01000001
Gammaproteobacteria
Shigella boydii [LPTQ]
58315
58391
+
Met
CAT
[ENA]
¡û
>W1711115379
LUAD01000026
Gammaproteobacteria
Morganella sp. HMSC11D09 [LUAD]
48264
48340
+
Met
CAT
[ENA]
¡û
>W1711156042
LVOT01000074
Gammaproteobacteria
Escherichia coli [LVOT]
45914
45838
-
Met
CAT
[ENA]
¡û
>W1711173681
LWDC01000001
Gammaproteobacteria
Escherichia coli [LWDC]
2900067
2900143
+
Met
CAT
[ENA]
¡û
>W131194277
ASQM01000187
Gammaproteobacteria
Escherichia coli KTE33 [ASQM]
40514
40590
+
Met
CAT
[ENA]
¡û
>W1711930245
NAGB01000098
Gammaproteobacteria
Escherichia coli [NAGB]
53335
53411
+
Met
CAT
[ENA]
¡û
>WENV180355666
OBNI01016570
[OBNI] sediment metagenome; sediment
180
256
+
fMet
CAT
[ENA]
¡û
>WENV181193827
OEQO01002489
[OEQO] metagenome; water of meat washing
763
687
-
fMet
CAT
[ENA]
¡û
>WENV182845900
OKJH01000574
[OKJH] human gut metagenome; human gut
600
524
-
fMet
CAT
[ENA]
¡û
>WENV170203987
CEPS01099544
[CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
425
501
+
Met
CAT
[ENA]
¡û
>C181142994
CP026845
Gammaproteobacteria
Shigella boydii NCTC 9733 [CP026845]
3536754
3536830
+
Met
CAT
-
¡û
>C181143110
CP026846
Gammaproteobacteria
Shigella boydii 59-2708 [CP026846]
4457074
4456998
-
Met
CAT
-
¡û
>C181143464
CP026877
Gammaproteobacteria
Shigella boydii ATCC 35964 [CP026877]
2790701
2790625
-
Met
CAT
-
¡û
>C181168542
CP028813
Gammaproteobacteria
Edwardsiella ictaluri MS-17-156 [CP028813]
861219
861295
+
Met
CAT
-
¡û
>W1910098112
BFVW01000054
Gammaproteobacteria
Escherichia coli KK-NP005 [BFVW]
33363
33287
-
Met
CAT
[ENA]
¡û
>W1911159338
NPMJ01000002
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Johannesburg CFSAN059880 [NPMJ]
215487
215563
+
Met
CAT
[ENA]
¡û
>W1911162941
NPZJ01000190
Gammaproteobacteria
Escherichia coli ECCTRSRTH04 [NPZJ]
89267
89191
-
Met
CAT
[ENA]
¡û
>C09106059
CP001600
Gammaproteobacteria
Edwardsiella ictaluri 93-146 [CP001600]
817747
817671
-
Met
CAT
[Ensembl]
¡û
>W1911168717
NQCS01000030
Gammaproteobacteria
Escherichia coli ECCTRSRTH10 [NQCS]
71
147
+
Met
CAT
[ENA]
¡û
>W1911224391
NRVI01000149
Gammaproteobacteria
Escherichia coli A93 [NRVI]
46215
46139
-
Met
CAT
[ENA]
¡û
>W1911224607
NRVL01000064
Gammaproteobacteria
Escherichia coli A32 [NRVL]
44734
44810
+
Met
CAT
[ENA]
¡û
>W1911757969
QWSJ01000007
Gammaproteobacteria
Shigella boydii DMB SH137 [QWSJ]
29566
29642
+
Met
CAT
[ENA]
¡û
>W1810097228
PGKE01000003
Gammaproteobacteria
Escherichia coli sc14-204 [PGKE]
89318
89242
-
Met
CAT
[ENA]
¡û
>W1810162846
PJFU01000007
Gammaproteobacteria
Escherichia coli 3150 [PJFU]
162293
162369
+
Met
CAT
[ENA]
¡û
>W1810276516
PSSR01000003
Gammaproteobacteria
Shigella boydii ATCC 35965 [PSSR]
39006
39082
+
Met
CAT
[ENA]
¡û
>W1810327257
PUGM01000043
Gammaproteobacteria
Shigella dysenteriae BS987 [PUGM]
11159
11083
-
Met
CAT
[ENA]
¡û
>W1810534529
QDAD01000001
Gammaproteobacteria
Edwardsiella ictaluri S07-698 [QDAD]
335706
335630
-
Met
CAT
[ENA]
¡û
>W2010000588
AAABPQ010000019
Gammaproteobacteria
Shigella boydii 335565 [AAABPQ]
27846
27770
-
fMet
CAT
[ENA]
¡û
>W2010038364
AARNTS010000001
Gammaproteobacteria
Escherichia albertii PNUSAE018743 [AARNTS]
197088
197164
+
fMet
CAT
[ENA]
¡û
>W2010042709
AATHVR010000006
Gammaproteobacteria
Escherichia fergusonii ATCC 35473 [AATHVR]
18938
18862
-
fMet
CAT
[ENA]
¡û
>W2010042816
AATHVU010000024
Gammaproteobacteria
Escherichia fergusonii ATCC 35471 [AATHVU]
35659
35735
+
fMet
CAT
[ENA]
¡û
>W2010042892
AATHVW010000026
Gammaproteobacteria
Escherichia fergusonii 77-0488 [AATHVW]
35659
35735
+
fMet
CAT
[ENA]
¡û
>W2010046933
AAUFHC010000001
Gammaproteobacteria
Shigella boydii 862967 [AAUFHC]
74652
74576
-
fMet
CAT
[ENA]
¡û
>W2010048245
AAUQWQ010000019
Gammaproteobacteria
Shigella boydii 208727 [AAUQWQ]
27846
27770
-
fMet
CAT
[ENA]
¡û
>W2010052729
AAUXFY010000017
Gammaproteobacteria
Shigella boydii PNUSAE020916 [AAUXFY]
27846
27770
-
fMet
CAT
[ENA]
¡û
>W2010059095
AAVBZG010000019
Gammaproteobacteria
Shigella boydii AM09650 [AAVBZG]
27849
27773
-
fMet
CAT
[ENA]
¡û
>W2010060851
AAVCAI010000001
Gammaproteobacteria
Shigella boydii 2012C-3223 [AAVCAI]
77739
77663
-
fMet
CAT
[ENA]
¡û
>W2010065142
AAVDHZ010000018
Gammaproteobacteria
Shigella boydii 310162 [AAVDHZ]
27846
27770
-
fMet
CAT
[ENA]
¡û
>W2010067852
AAVEFF010000001
Gammaproteobacteria
Shigella boydii 146018 [AAVEFF]
74651
74575
-
fMet
CAT
[ENA]
¡û
>W2010068040
AAVEFI010000004
Gammaproteobacteria
Shigella boydii 146017 [AAVEFI]
30982
30906
-
fMet
CAT
[ENA]
¡û
>W2010068102
AAVEFL010000001
Gammaproteobacteria
Shigella boydii 145974 [AAVEFL]
73593
73517
-
fMet
CAT
[ENA]
¡û
>W2010069225
AAVFAP010000020
Gammaproteobacteria
Shigella boydii ATCC 8704 [AAVFAP]
27848
27772
-
fMet
CAT
[ENA]
¡û
>W2010456185
JAAEVZ010000004
Gammaproteobacteria
Erwinia amylovora Ea160-3-51 [JAAEVZ]
338647
338571
-
fMet
CAT
[ENA]
¡û
>W2010456335
JAAEWD010000010
Gammaproteobacteria
Erwinia amylovora Ea1-00 [JAAEWD]
63662
63586
-
fMet
CAT
[ENA]
¡û
>W2010642128
JABWMT020000004
Gammaproteobacteria
Escherichia sp. 93.1518 [JABWMT]
130026
129950
-
fMet
CAT
[ENA]
¡û
>W2011322669
QWSJ01000007
Gammaproteobacteria
Shigella boydii DMB SH137 [QWSJ]
29566
29642
+
fMet
CAT
[ENA]
¡û
>W2011821658
UFXT01000001
Gammaproteobacteria
Edwardsiella ictaluri NCTC12122 [UFXT]
3151086
3151010
-
fMet
CAT
[ENA]
¡û
>W2012032070
VHOJ01000006
Gammaproteobacteria
Morganella morganii 4601 [VHOJ]
48398
48474
+
fMet
CAT
[ENA]
¡û
>W2110389297
JADVJB010000007
Gammaproteobacteria
Citrobacter amalonaticus CB00034 [JADVJB]
182948
182872
-
fMet
CAT
[ENA]
¡û
>W2110390332
JADVJY010000004
Gammaproteobacteria
Citrobacter sp. FDAARGOS_156 CB00001 [JADVJY]
142928
142852
-
fMet
CAT
[ENA]
¡û
>W2110392976
JADWNJ010000004
Gammaproteobacteria
Citrobacter youngae CB00005 [JADWNJ]
180466
180390
-
fMet
CAT
[ENA]
¡û
>W2110506840
JAFJYB010000001
Gammaproteobacteria
Candidatus Symbiopectobacterium endolongispinus [JAFJYB]
466248
466172
-
fMet
CAT
[ENA]
¡û
>W2110651231
JAHVHO010000001
Gammaproteobacteria
Ferrimonas balearica DP5N14-3 [JAHVHO]
472891
472967
+
fMet
CAT
[ENA]
¡û
>W2110651728
JAHVHW010000007
Gammaproteobacteria
Ferrimonas balearica DP5N7-6 [JAHVHW]
1235962
1235886
-
fMet
CAT
[ENA]
¡û
>W2110652647
JAHVIL010000001
Gammaproteobacteria
Ferrimonas balearica DP8N14-8 [JAHVIL]
1266541
1266465
-
fMet
CAT
[ENA]
¡û
>W2110653391
JAHVIX010000003
Gammaproteobacteria
Priestia flexa TN35-1 [JAHVIX]
304905
304981
+
fMet
CAT
[ENA]
¡û
>W2110654769
JAHVJZ010000001
Gammaproteobacteria
Marinobacter nauticus DP3N21-5 [JAHVJZ]
503704
503628
-
fMet
CAT
[ENA]
¡û
>W2110655480
JAHVKN010000001
Gammaproteobacteria
Ferrimonas balearica DP4N21-5 [JAHVKN]
531674
531750
+
fMet
CAT
[ENA]
¡û
>W2110655482
JAHVKN010000001
Gammaproteobacteria
Ferrimonas balearica DP4N21-5 [JAHVKN]
531971
532047
+
fMet
CAT
[ENA]
¡û
>W2110658526
JAHWRT010000001
Gammaproteobacteria
Ferrimonas balearica DP2N21-1 [JAHWRT]
528053
528129
+
fMet
CAT
[ENA]
¡û
>C201008011
AP021894
Gammaproteobacteria
Escherichia coli 2018-10-1CC [AP021894]
958181
958105
-
fMet
CAT
-
¡û
>C201119322
CP042942
Gammaproteobacteria
Escherichia fergusonii ATCC 35473 [CP042942]
2299757
2299681
-
fMet
CAT
-
¡û
>C201119351
CP042945
Gammaproteobacteria
Escherichia fergusonii ATCC 35471 [CP042945]
1174256
1174332
+
fMet
CAT
-
¡û
>C211095496
CP054060
Gammaproteobacteria
Edwardsiella ictaluri T1-1 [CP054060]
843236
843160
-
fMet
CAT
-
¡û
>C211112871
CP057692
Gammaproteobacteria
Escherichia fergusonii RHB17-C11 [CP057692]
3804509
3804433
-
fMet
CAT
-
¡û
>C211315704
CP072911
Gammaproteobacteria
Escherichia coli C5 [CP072911]
4416975
4416899
-
fMet
CAT
-
¡û
>C211353442
CP077242
Gammaproteobacteria
Escherichia fergusonii FDAARGOS 1438 [CP077242]
708379
708455
+
fMet
CAT
-
¡û
>C231134345
CP073976
Gammaproteobacteria
Escherichia coli MB20 [CP073976]
953642
953566
-
fMet
CAT
-
¡û
>C231192920
CP084521
Gammaproteobacteria
Edwardsiella ictaluri S07-698 [CP084521]
816252
816176
-
fMet
CAT
-
¡û
>C231193016
CP084524
Gammaproteobacteria
Edwardsiella ictaluri S97-773 [CP084524]
813969
813893
-
fMet
CAT
-
¡û
>C231312120
CP092062
Gammaproteobacteria
Edwardsiella ictaluri S00-1912 [CP092062]
859610
859686
+
fMet
CAT
-
¡û
>C231312217
CP092065
Gammaproteobacteria
Edwardsiella ictaluri S15-163 [CP092065]
850849
850925
+
fMet
CAT
-
¡û
>W2110767790
SDSE01000001
Gammaproteobacteria
Pectobacterium actinidiae IBSBF 3260 [SDSE]
302084
302008
-
fMet
CAT
[ENA]
¡û
>C231505408
CP106849
Gammaproteobacteria
Edwardsiella ictaluri 669 [CP106849]
835567
835491
-
fMet
CAT
-
¡û
>C231505502
CP106852
Gammaproteobacteria
Edwardsiella ictaluri E9-302 [CP106852]
835569
835493
-
fMet
CAT
-
¡û
>C241054983
CP040933
Gammaproteobacteria
Edwardsiella ictaluri YCH [CP040933]
840997
840921
-
fMet
CAT
-
¡û
>C241135403
CP049278
Gammaproteobacteria
Shigella boydii 600690 [CP049278]
4343996
4343920
-
fMet
CAT
-
¡û
>W2310005510
ABLMEJ010000002
Gammaproteobacteria
Edwardsiella ictaluri OTH-20-VL-NY-MS-0071 [ABLMEJ]
188272
188196
-
fMet
CAT
[ENA]
¡û
>W11161254
AFGE01000056
Gammaproteobacteria
Shigella genomosp. SF-2015 5216-82 [AFGE]
16622
16698
+
Met
CAT
[ENA]
¡û
>W1610966582
LVOT01000074
Gammaproteobacteria
Escherichia coli [LVOT]
45914
45838
-
Met
CAT
[ENA]
¡û
>W1610982286
LWDC01000001
Gammaproteobacteria
Escherichia coli [LWDC]
2900067
2900143
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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