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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309866 (71 seq.)
>W1710869663
LMJX01000001
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
53884
53810
-
Pro
CGG
[ENA]
¡û
>W1710875041
LMOB01000003
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
474464
474538
+
Pro
CGG
[ENA]
¡û
>W1710876179
LMPA01000001
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
53846
53772
-
Pro
CGG
[ENA]
¡û
>W1711173308
LWCT01000030
Actinomycetota
Plantibacter sp. H53 [LWCT]
11963
12037
+
Pro
CGG
[ENA]
¡û
>W1711461513
MJGW01000001
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
473733
473807
+
Pro
CGG
[ENA]
¡û
>WENV180016643
FSVR01000005
[FSVR] metagenome; soil
2285
2211
-
Pro
CGG
[ENA]
¡û
>WENV180017002
FSWJ01000398
[FSWJ] metagenome; soil
73348
73272
-
Pro
CGG
[ENA]
¡û
>WENV180017283
FSWR01000057
[FSWR] metagenome; soil
64456
64532
+
Pro
CGG
[ENA]
¡û
>WENV180017674
FSXL01000596
[FSXL] metagenome; soil
11681
11607
-
Pro
CGG
[ENA]
¡û
>WENV180024040
FTIF01013433
[FTIF] metagenome; soil
2178
2254
+
Pro
CGG
[ENA]
¡û
>WENV180033488
FTKK01041366
[FTKK] metagenome; soil
348
274
-
Pro
CGG
[ENA]
¡û
>WENV180034043
FTKM01235251
[FTKM] metagenome; soil
76
2
-
Pro
CGG
[ENA]
¡û
>WENV180304517
OBJI01099832
[OBJI] soil metagenome; soil
24
98
+
Pro
CGG
[ENA]
¡û
>WENV181166382
OEIU01000182
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
18054
18130
+
Pro
CGG
[ENA]
¡û
>C191092365
CP032624
Actinomycetota
Gryllotalpicola protaetiae 2DFW10M-5 [CP032624]
2472048
2471972
-
Pro
CGG
-
¡û
>C191101006
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
3900409
3900335
-
Pro
CGG
-
¡û
>C191182584
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
859073
858999
-
Pro
CGG
-
¡û
>W1911671590
QGAE01000002
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
833189
833115
-
Pro
CGG
[ENA]
¡û
>W1810169241
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
1911086
1911012
-
Pro
CGG
[ENA]
¡û
>W1810277205
PSTQ01000005
Actinomycetota
Pseudoclavibacter sp. AY1F1 [PSTQ]
132008
131934
-
Pro
CGG
[ENA]
¡û
>W1810277381
PSTU01000015
Actinomycetota
Pseudoclavibacter sp. Z016 [PSTU]
162918
162992
+
Pro
CGG
[ENA]
¡û
>W1810277518
PSTX01000016
Actinomycetota
Pseudoclavibacter sp. RFBJ5 [PSTX]
163013
163087
+
Pro
CGG
[ENA]
¡û
>W1810277569
PSTY01000022
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
163426
163500
+
Pro
CGG
[ENA]
¡û
>W1810277622
PSTZ01000010
Actinomycetota
Pseudoclavibacter sp. RFBB5 [PSTZ]
136270
136344
+
Pro
CGG
[ENA]
¡û
>W1810277639
PSUA01000005
Actinomycetota
Pseudoclavibacter sp. RFBA6 [PSUA]
346869
346795
-
Pro
CGG
[ENA]
¡û
>W1810282039
PSXX01000005
Actinomycetota
Pseudoclavibacter sp. AY1H1 [PSXX]
166804
166878
+
Pro
CGG
[ENA]
¡û
>W1810282130
PSXZ01000013
Actinomycetota
Pseudoclavibacter sp. RFBJ3 [PSXZ]
163013
163087
+
Pro
CGG
[ENA]
¡û
>W1810282160
PSYA01000004
Actinomycetota
Pseudoclavibacter sp. RFBI5 [PSYA]
85129
85055
-
Pro
CGG
[ENA]
¡û
>W1810282237
PSYB01000015
Actinomycetota
Pseudoclavibacter sp. RFBI4 [PSYB]
163596
163670
+
Pro
CGG
[ENA]
¡û
>W1810282260
PSYC01000014
Actinomycetota
Pseudoclavibacter sp. RFBG4 [PSYC]
50309
50235
-
Pro
CGG
[ENA]
¡û
>W1810476282
QANL01000001
Actinomycetota
Planctomonas deserti 13S1-3 [QANL]
1383402
1383328
-
Pro
CGG
[ENA]
¡û
>W1810577919
QEOP01000001
Actinomycetota
Amnibacterium flavum M8JJ-5 [QEOP]
991483
991409
-
Pro
CGG
[ENA]
¡û
>W2010309665
CABWLM010000007
Actinomycetota
Pseudoclavibacter sp. 8L [CABWLM]
184472
184546
+
Pro
CGG
[ENA]
¡û
>W2010310089
CABWLU010000012
Actinomycetota
Plantibacter sp. T3 [CABWLU]
117437
117363
-
Pro
CGG
[ENA]
¡û
>W2010526967
JAANZA010000001
Actinomycetota
Cryobacterium sp. BB307 [JAANZA]
232038
232112
+
Pro
CGG
[ENA]
¡û
>W2010672486
JACCCM010000003
Actinomycetota
Pseudoclavibacter sp. JAI123 [JACCCM]
367389
367315
-
Pro
CGG
[ENA]
¡û
>W2010694707
JACHBP010000001
Actinomycetota
Cryobacterium mesophilum DSM 19267 [JACHBP]
1811475
1811401
-
Pro
CGG
[ENA]
¡û
>W2010715143
JACHWJ010000005
Actinomycetota
Pseudoclavibacter helvolus DSM 20419 [JACHWJ]
18992
19066
+
Pro
CGG
[ENA]
¡û
>W2011249980
QGAE01000002
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
833189
833115
-
Pro
CGG
[ENA]
¡û
>W2011373262
RBIC01000014
Actinomycetota
Plantibacter sp. YR521 [RBIC]
188850
188924
+
Pro
CGG
[ENA]
¡û
>W2011447539
RKHL01000001
Actinomycetota
Plantibacter flavus DSM 14012 [RKHL]
2920714
2920640
-
Pro
CGG
[ENA]
¡û
>W2011604765
SJEV01000001
Actinomycetota
Microbacteriaceae bacterium J5903 [SJEV]
816095
816169
+
Pro
CGG
[ENA]
¡û
>W2011659902
SOFI01000003
Actinomycetota
Cryobacterium mesophilum CGMCC 1.10440 [SOFI]
1859124
1859050
-
Pro
CGG
[ENA]
¡û
>W2012021764
VFPN01000001
Actinomycetota
Klugiella xanthotipulae DSM 18031 [VFPN]
669639
669713
+
Pro
CGG
[ENA]
¡û
>W2012228385
WBJX01000004
Actinomycetota
Pseudoclavibacter terrae THG-MD12 [WBJX]
136085
136159
+
Pro
CGG
[ENA]
¡û
>W2110195929
JABXWQ010000001
Actinomycetota
Cryobacterium sp. BB736 [JABXWQ]
578894
578968
+
Pro
CGG
[ENA]
¡û
>W2110204821
JACEXJ010000014
Actinomycetota
Arcanobacterium sp. JY-X174 [JACEXJ]
1587
1513
-
Pro
CGG
[ENA]
¡û
>W2110288810
JACYNV010000002
Actinomycetota
Plantibacter sp. CFBP 8775 CFBP8775 [JACYNV]
855425
855351
-
Pro
CGG
[ENA]
¡û
>W2110290003
JACYTS010000003
Actinomycetota
Plantibacter sp. CFBP 8798 CFBP8798 [JACYTS]
346504
346430
-
Pro
CGG
[ENA]
¡û
>W2110290090
JACYTU010000008
Actinomycetota
Plantibacter sp. CFBP 8804 CFBP8804 [JACYTU]
61217
61143
-
Pro
CGG
[ENA]
¡û
>W2110329791
JADKSI010000003
Actinomycetota
Plantibacter sp. VKM Ac-2876 [JADKSI]
738952
739026
+
Pro
CGG
[ENA]
¡û
>W2110329840
JADKSJ010000002
Actinomycetota
Plantibacter sp. VKM Ac-2880 [JADKSJ]
657522
657448
-
Pro
CGG
[ENA]
¡û
>W2110329885
JADKSK010000002
Actinomycetota
Plantibacter sp. VKM Ac-2885 [JADKSK]
777369
777443
+
Pro
CGG
[ENA]
¡û
>W2110329905
JADKSL010000005
Actinomycetota
Pseudoclavibacter sp. VKM Ac-2867 [JADKSL]
24406
24332
-
Pro
CGG
[ENA]
¡û
>W2110329974
JADKSM010000004
Actinomycetota
Pseudoclavibacter sp. VKM Ac-2888 [JADKSM]
25222
25148
-
Pro
CGG
[ENA]
¡û
>W2110438088
JAEPES010000005
Actinomycetota
Lacisediminihabitans changchengi G11-30 [JAEPES]
74094
74020
-
Pro
CGG
[ENA]
¡û
>W2110492830
JAFEVN010000002
Actinomycetota
Pseudoclavibacter sp. Marseille-Q4354 [JAFEVN]
207769
207843
+
Pro
CGG
[ENA]
¡û
>C201303071
CP059492
Actinomycetota
Arcanobacterium sp. JY-X040 [CP059492]
198670
198596
-
Pro
CGG
-
¡û
>C231019677
AP025737
Actinomycetota
Herbiconiux sp. L3-i23 [AP025737]
301391
301317
-
Pro
CGG
-
¡û
>W2130018371
JACYTW010000047
Actinomycetota
Plantibacter sp. CFBP 13570 CFBP13570 [JACYTW]
20636
20562
-
Pro
CGG
[ENA]
¡û
>W1610112220
CZJS01000063
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
931
1007
+
Pro
CGG
[ENA]
¡û
>W1610112520
CZJY01000035
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
897
973
+
Pro
CGG
[ENA]
¡û
>W1610732009
LMJX01000001
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
53884
53810
-
Pro
CGG
[ENA]
¡û
>W1610737387
LMOB01000003
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
474464
474538
+
Pro
CGG
[ENA]
¡û
>W1610738525
LMPA01000001
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
53846
53772
-
Pro
CGG
[ENA]
¡û
>W1610981913
LWCT01000030
Actinomycetota
Plantibacter sp. H53 [LWCT]
11963
12037
+
Pro
CGG
[ENA]
¡û
>W1710114924
CZJS01000063
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
931
1007
+
Pro
CGG
[ENA]
¡û
>W1710115224
CZJY01000035
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
897
973
+
Pro
CGG
[ENA]
¡û
>W1710603980
FUZO01000002
Actinomycetota
Plantibacter cousiniae [FUZO]
712297
712371
+
Pro
CGG
[ENA]
¡û
>W1710608088
FXAP01000004
Actinomycetota
Plantibacter flavus [FXAP]
213416
213342
-
Pro
CGG
[ENA]
¡û
>W1710609364
FXWJ01000005
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
485241
485315
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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