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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309891 (63 seq.)
>W1710786971
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2484240
2484166
-
Pro
TGG
[ENA]
¡û
>W1711627041
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
4868442
4868516
+
Pro
TGG
[ENA]
¡û
>C171109499
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
3892879
3892953
+
Pro
TGG
-
¡û
>WENV180023357
FTHV01001182
[FTHV] metagenome; soil
2713
2639
-
Pro
TGG
[ENA]
¡û
>WENV180023486
FTHY01001181
[FTHY] metagenome; soil
2713
2639
-
Pro
TGG
[ENA]
¡û
>WENV180024709
FTIJ01000387
[FTIJ] metagenome; soil
3836
3910
+
Pro
TGG
[ENA]
¡û
>WENV180033191
FTKF01025877
[FTKF] metagenome; soil
1723
1797
+
Pro
TGG
[ENA]
¡û
>WENV180033605
FTKL01000403
[FTKL] metagenome; soil
31368
31442
+
Pro
TGG
[ENA]
¡û
>W141282764
JAIZ01000371
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
7183
7257
+
Pro
TGG
[ENA]
¡û
>WENV170565624
FJVZ01001284
[FJVZ] metagenome; soil
6101
6027
-
Pro
TGG
[ENA]
¡û
>C181116328
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
2791353
2791279
-
Pro
TGG
-
¡û
>W141755638
JNWR01000025
Actinomycetota
Kitasatospora aureofaciens [JNWR]
57024
56950
-
Pro
TGG
[ENA]
¡û
>W141760862
JOAI01000020
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
62215
62289
+
Pro
TGG
[ENA]
¡û
>W141767563
JOER01000083
Actinomycetota
Kitasatospora aureofaciens [JOER]
4280
4354
+
Pro
TGG
[ENA]
¡û
>W141768750
JOFK01000018
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
59194
59120
-
Pro
TGG
[ENA]
¡û
>W141770085
JOGG01000015
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
31762
31836
+
Pro
TGG
[ENA]
¡û
>W141770148
JOGH01000007
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
72507
72431
-
Pro
TGG
[ENA]
¡û
>W141771130
JOGY01001094
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
184
110
-
Pro
TGG
[ENA]
¡û
>W141771970
JOHN01000045
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
18332
18406
+
Pro
TGG
[ENA]
¡û
>W141774346
JOJA01000003
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
155569
155493
-
Pro
TGG
[ENA]
¡û
>W141818521
JQLN01000007
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
1550407
1550331
-
Pro
TGG
[ENA]
¡û
>W141819976
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
4066751
4066827
+
Pro
TGG
[ENA]
¡û
>W1911243744
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
5178294
5178368
+
Pro
TGG
[ENA]
¡û
>W1810173050
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
2977460
2977384
-
Pro
TGG
[ENA]
¡û
>W1810394711
PYBW01000074
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
49021
49097
+
Pro
TGG
[ENA]
¡û
>W1810907988
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
4370050
4369976
-
Pro
TGG
[ENA]
¡û
>W2010705903
JACHJV010000001
Actinomycetota
Kitasatospora kifunensis DSM 41654 [JACHJV]
2584520
2584444
-
Pro
TGG
[ENA]
¡û
>W2011069103
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
5178294
5178368
+
Pro
TGG
[ENA]
¡û
>W2011443253
RJVJ01000001
Actinomycetota
Kitasatospora cineracea DSM 44780 [RJVJ]
2774697
2774772
+
Pro
TGG
[ENA]
¡û
>W2011453150
RKQG01000001
Actinomycetota
Kitasatospora niigatensis DSM 44781 [RKQG]
3453027
3453102
+
Pro
TGG
[ENA]
¡û
>W2011491085
RSFG01000003
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
260084
260158
+
Pro
TGG
[ENA]
¡û
>W2012038110
VIGB01000003
Actinomycetota
Kitasatospora sp. MMS16-CNU292 [VIGB]
5936718
5936794
+
Pro
TGG
[ENA]
¡û
>W2012047377
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
2485092
2485018
-
Pro
TGG
[ENA]
¡û
>W2012048926
VIWT01000001
Actinomycetota
Kitasatospora viridis DSM 44826 [VIWT]
4306890
4306966
+
Pro
TGG
[ENA]
¡û
>W2012230673
WBOF01000001
Actinomycetota
Streptomyces kaniharaensis SF-557 [WBOF]
1747896
1747822
-
Pro
TGG
[ENA]
¡û
>W2110039413
BMSD01000004
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
355085
355011
-
Pro
TGG
[ENA]
¡û
>W2110042541
BMUB01000018
Actinomycetota
Kitasatospora psammotica JCM 4434 [BMUB]
46332
46406
+
Pro
TGG
[ENA]
¡û
>W2110053231
BNBO01000005
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
223154
223080
-
Pro
TGG
[ENA]
¡û
>W2110511726
JAFLNG010000027
Actinomycetota
Streptomyces sp. FH025 [JAFLNG]
10439
10365
-
Pro
TGG
[ENA]
¡û
>W2110641924
JAHSQD010000058
Actinomycetota
Streptomyces sp. LS1784 [JAHSQD]
4069
4143
+
Pro
TGG
[ENA]
¡û
>W2110645403
JAHTKP010000043
Actinomycetota
Kitasatospora aureofaciens CPD02 [JAHTKP]
31136
31062
-
Pro
TGG
[ENA]
¡û
>C201037013
CP023698
Actinomycetota
Streptomyces viridifaciens ATCC 11989 [CP023698]
5100631
5100705
+
Pro
TGG
-
¡û
>W2110746822
LFMD02000003
Actinomycetota
Kitasatospora sp. SUK 42 [LFMD]
998975
998901
-
Pro
TGG
[ENA]
¡û
>C231284935
CP090841
Actinomycetota
Streptomyces viridifaciens DSM 40239 [CP090841]
4986889
4986963
+
Pro
TGG
-
¡û
>W2110751236
MSJQ01000126
Actinomycetota
Streptomyces sp. CBMA156 [MSJQ]
5104
5030
-
Pro
TGG
[ENA]
¡û
>C231552516
CP113837
Actinomycetota
Kitasatospora sp. YST-16 [CP113837]
2211159
2211084
-
Pro
TGG
-
¡û
>C231566207
CP115450
Actinomycetota
Kitasatospora sp. HUAS 3-15 [CP115450]
5725732
5725806
+
Pro
TGG
-
¡û
>C241202571
CP107904
Actinomycetota
Kitasatospora sp. NBC_00458 [CP107904]
3126417
3126343
-
Pro
TGG
-
¡û
>C241208707
CP108404
Actinomycetota
Kitasatospora sp. NBC_01302 [CP108404]
6272564
6272640
+
Pro
TGG
-
¡û
>C241209692
CP108458
Actinomycetota
Kitasatospora sp. NBC_01266 [CP108458]
3033504
3033428
-
Pro
TGG
-
¡û
>C241209763
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
3202721
3202647
-
Pro
TGG
-
¡û
>C241210130
CP108476
Actinomycetota
Kitasatospora sp. NBC_01250 [CP108476]
6125553
6125629
+
Pro
TGG
-
¡û
>C241210194
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
6469555
6469629
+
Pro
TGG
-
¡û
>C241210296
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
3075276
3075202
-
Pro
TGG
-
¡û
>W2130032939
JAGIYX010000035
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
43874
43800
-
Pro
TGG
[ENA]
¡û
>W1511311685
JPRF01000485
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
14675
14749
+
Pro
TGG
[ENA]
¡û
>W1511529093
JYJF01000125
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
3349
3423
+
Pro
TGG
[ENA]
¡û
>W1511545193
JZKG01000055
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
16631
16557
-
Pro
TGG
[ENA]
¡û
>W1511545243
JZKH01000027
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
63101
63027
-
Pro
TGG
[ENA]
¡û
>W1511590489
LBHA01000513
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
11548
11474
-
Pro
TGG
[ENA]
¡û
>W1511687885
LFVW01000001
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
18721
18647
-
Pro
TGG
[ENA]
¡û
>W1610650826
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2484240
2484166
-
Pro
TGG
[ENA]
¡û
>W1710765792
LIPD01000001
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
63080
63154
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK