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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.310117 (73 seq.)
>W1711572478
MNBX01000024
Gammaproteobacteria
Sodalis sp. TME1 [MNBX]
117
42
-
Glu
TTC
[ENA]
¡û
>W131230137
AUHJ01000001
Gammaproteobacteria
Haliea salexigens DSM 19537 [AUHJ]
155906
155981
+
Glu
TTC
[ENA]
¡û
>w021655
AAVV01000002
Gammaproteobacteria
marine gamma proteobacterium HTCC2080 [AAVV]
85436
85359
-
Glu
TTC
[ENA]
¡û
>WENV180103784
OAPB01006255
[OAPB] marine metagenome; Sterile flask
531
606
+
Glu
TTC
[ENA]
¡û
>WENV180214627
OBAP01023732
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
295
370
+
Glu
TTC
[ENA]
¡û
>WENV180384416
OBOX01044696
[OBOX] marine metagenome; Sterile flask
250
175
-
Glu
TTC
[ENA]
¡û
>WENV180385912
OBPB01005177
[OBPB] marine metagenome; Sterile flask
1443
1368
-
Glu
TTC
[ENA]
¡û
>WENV180388498
OBPH01014220
[OBPH] marine metagenome; Sterile flask
456
531
+
Glu
TTC
[ENA]
¡û
>WENV180389514
OBPJ01033113
[OBPJ] marine metagenome; seawater
217
292
+
Glu
TTC
[ENA]
¡û
>WENV180390738
OBPL01016398
[OBPL] marine metagenome; Sterivex filter
315
240
-
Glu
TTC
[ENA]
¡û
>WENV180394937
OBPS01183341
[OBPS] marine metagenome; ENVO:00002010 seawater
134
59
-
Glu
TTC
[ENA]
¡û
>WENV180394944
OBPS01189365
[OBPS] marine metagenome; ENVO:00002010 seawater
80
5
-
Glu
TTC
[ENA]
¡û
>WENV180394960
OBPT01000071
[OBPT] marine metagenome; ENVO:00002010 seawater
25086
25011
-
Glu
TTC
[ENA]
¡û
>WENV180396079
OBPU01028498
[OBPU] marine metagenome; ENVO:00002010
132
207
+
Glu
TTC
[ENA]
¡û
>WENV180396903
OBPW01029253
[OBPW] marine metagenome; seawater
7
82
+
Glu
TTC
[ENA]
¡û
>WENV180399914
OBQO01076570
[OBQO] marine metagenome; ENVO:00002010
232
157
-
Glu
TTC
[ENA]
¡û
>WENV180590536
OCOT01058002
[OCOT] marine metagenome; ENVO:00002010
205
280
+
Glu
TTC
[ENA]
¡û
>WENV180595330
OCPD01005620
[OCPD] marine metagenome; Mesotrophic water
105
30
-
Glu
TTC
[ENA]
¡û
>WENV180638682
OCRI01006995
[OCRI] marine metagenome; Sterile flask
242
317
+
Glu
TTC
[ENA]
¡û
>WENV181313683
OFJH01001130
[OFJH] marine metagenome; seawater
1691
1616
-
Glu
TTC
[ENA]
¡û
>WENV181315974
OFJR01007181
[OFJR] marine metagenome; seawater
622
547
-
Glu
TTC
[ENA]
¡û
>WENV181319420
OFKD01024954
[OFKD] marine metagenome; seawater
295
220
-
Glu
TTC
[ENA]
¡û
>WENV181321979
OFKO01004120
[OFKO] marine metagenome; seawater
203
278
+
Glu
TTC
[ENA]
¡û
>WENV181322325
OFKQ01004002
[OFKQ] marine metagenome; seawater
603
528
-
Glu
TTC
[ENA]
¡û
>WENV181385691
OFRJ01007710
[OFRJ] marine metagenome; seawater
120
195
+
Glu
TTC
[ENA]
¡û
>WENV181391482
OFRT01011626
[OFRT] seawater metagenome; seawater
749
824
+
Glu
TTC
[ENA]
¡û
>WENV182545272
OJBN01000530
[OJBN] seawater metagenome; Sea water
5792
5717
-
Glu
TTC
[ENA]
¡û
>WENV182550413
OJCA01001658
[OJCA] seawater metagenome; Sea water
1916
1991
+
Glu
TTC
[ENA]
¡û
>WENV182552183
OJCJ01011116
[OJCJ] seawater metagenome; Sea water
802
877
+
Glu
TTC
[ENA]
¡û
>WENV182556372
OJDG01006212
[OJDG] seawater metagenome; Sea water
1274
1199
-
Glu
TTC
[ENA]
¡û
>WENV182558904
OJDN01012712
[OJDN] seawater metagenome; Sea water
75
150
+
Glu
TTC
[ENA]
¡û
>WENV182565793
OJEH01051833
[OJEH] seawater metagenome; Sea water
215
290
+
Glu
TTC
[ENA]
¡û
>WENV182570300
OJFC01001323
[OJFC] seawater metagenome; Sea water
957
1032
+
Glu
TTC
[ENA]
¡û
>WENV182570378
OJFC01003769
[OJFC] seawater metagenome; Sea water
76
1
-
Glu
TTC
[ENA]
¡û
>WENV182571611
OJFK01001997
[OJFK] seawater metagenome; Sea water
3885
3960
+
Glu
TTC
[ENA]
¡û
>WENV182571649
OJFK01002922
[OJFK] seawater metagenome; Sea water
886
961
+
Glu
TTC
[ENA]
¡û
>WENV182583844
OJHF01000111
[OJHF] seawater metagenome; Sea water
18219
18144
-
Glu
TTC
[ENA]
¡û
>WENV182585077
OJHH01000791
[OJHH] seawater metagenome; Sea water
6887
6812
-
Glu
TTC
[ENA]
¡û
>WENV182587122
OJHL01001587
[OJHL] seawater metagenome; Sea water
1242
1167
-
Glu
TTC
[ENA]
¡û
>WENV182590522
OJII01011353
[OJII] seawater metagenome; Sea water
178
253
+
Glu
TTC
[ENA]
¡û
>WENV182591309
OJIL01014876
[OJIL] seawater metagenome; Sea water
560
635
+
Glu
TTC
[ENA]
¡û
>WENV182593221
OJIT01007217
[OJIT] seawater metagenome; Sea water
571
646
+
Glu
TTC
[ENA]
¡û
>WENV183054364
OLGT01002741
[OLGT] seawater metagenome; Sea water
657
582
-
Glu
TTC
[ENA]
¡û
>WENV183058537
OLHR01000797
[OLHR] seawater metagenome; Sea water
7454
7529
+
Glu
TTC
[ENA]
¡û
>WENV183059444
OLHU01005008
[OLHU] seawater metagenome; Sea water
1348
1273
-
Glu
TTC
[ENA]
¡û
>WENV183616354
OOED01005781
[OOED] marine metagenome; seawater
334
409
+
Glu
TTC
[ENA]
¡û
>WENV183629715
OOGQ01002822
[OOGQ] marine metagenome; seawater
817
742
-
Glu
TTC
[ENA]
¡û
>WENV183630368
OOGS01006729
[OOGS] marine metagenome; seawater
379
454
+
Glu
TTC
[ENA]
¡û
>WENV170155189
CEOG01001203
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
13062
12987
-
Glu
TTC
[ENA]
¡û
>WENV170345770
CETF01067302
[CETF] marine metagenome genome assembly TARA_109_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3746
3821
+
Glu
TTC
[ENA]
¡û
>WENV170536852
CEWP01318136
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
74
1
-
Glu
TTC
[ENA]
¡û
>WENV170566960
FLLY01018192
[FLLY] seawater metagenome; seawater
329
254
-
Glu
TTC
[ENA]
¡û
>WENV170568022
FLMP01013324
[FLMP] seawater metagenome; seawater
1894
1819
-
Glu
TTC
[ENA]
¡û
>WENV170951317
MEHZ011548055
[MEHZ] marine metagenome; marine surface water
1972
1897
-
Glu
TTC
[ENA]
¡û
>C181203447
LN854557
Gammaproteobacteria
Sodalis glossinidius str. 'morsitans' [LN854557]
995432
995507
+
Glu
TTC
-
¡û
>C181203468
LN854557
Gammaproteobacteria
Sodalis glossinidius str. 'morsitans' [LN854557]
4119489
4119414
-
Glu
TTC
-
¡û
>C181203481
LN854557
Gammaproteobacteria
Sodalis glossinidius str. 'morsitans' [LN854557]
3310326
3310251
-
Glu
TTC
-
¡û
>W09112180
ABXQ01000043
Gammaproteobacteria
marine gamma proteobacterium HTCC2148 [ABXQ]
25864
25789
-
Glu
TTC
[ENA]
¡û
>W1810192272
PKLZ01000003
Gammaproteobacteria
Kineobactrum sediminis F02 [PKLZ]
554868
554793
-
Glu
TTC
[ENA]
¡û
>W2010318837
CACSIL010000002
Gammaproteobacteria
Halioglobus japonicus [CACSIL]
218051
218126
+
Glu
TTC
[ENA]
¡û
>W2010318839
CACSIL010000002
Gammaproteobacteria
Halioglobus japonicus [CACSIL]
245563
245488
-
Glu
TTC
[ENA]
¡û
>W2011416767
RFLW01000002
Gammaproteobacteria
Halieaceae bacterium LZ-16-2 [RFLW]
744098
744173
+
Glu
TTC
[ENA]
¡û
>W2011609058
SJOI01000001
Gammaproteobacteria
Sodalis sp. 159R [SJOI]
3889074
3889149
+
Glu
TTC
[ENA]
¡û
>W2011609065
SJOI01000001
Gammaproteobacteria
Sodalis sp. 159R [SJOI]
4172771
4172846
+
Glu
TTC
[ENA]
¡û
>W2011609093
SJOI01000001
Gammaproteobacteria
Sodalis sp. 159R [SJOI]
3529254
3529179
-
Glu
TTC
[ENA]
¡û
>W2011609104
SJOI01000001
Gammaproteobacteria
Sodalis sp. 159R [SJOI]
2740245
2740170
-
Glu
TTC
[ENA]
¡û
>SRA1050906
SRR035096.48700
454 Sequencing (SRP001817)
111
36
-
Glu
TTC
[SRA]
>SRA1051202
SRR035096.108472
454 Sequencing (SRP001817)
252
327
+
Glu
TTC
[SRA]
>W2012440301
WUBS01000051
Gammaproteobacteria
Enterobacteriales bacterium SAP-6 [WUBS]
537
462
-
Glu
TTC
[ENA]
¡û
>C211335728
CP075169
Gammaproteobacteria
Sodalis sp. dw_23 [CP075169]
1135856
1135931
+
Glu
TTC
-
¡û
>C211335749
CP075169
Gammaproteobacteria
Sodalis sp. dw_23 [CP075169]
6356062
6355987
-
Glu
TTC
-
¡û
>C211335755
CP075169
Gammaproteobacteria
Sodalis sp. dw_23 [CP075169]
6058239
6058164
-
Glu
TTC
-
¡û
>C241305440
CP132913
Gammaproteobacteria
Sodalis sp. [CP132913]
28814
28889
+
Glu
TTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK