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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.310583 (53 seq.)
>W1711078238
LSMR01000200
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
8464
8540
+
Arg
CCG
[ENA]
¡û
>W1711129003
LUTR01000035
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
2586
2510
-
Arg
CCG
[ENA]
¡û
>W1711129044
LUTS01000005
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
175947
176023
+
Arg
CCG
[ENA]
¡û
>W1711425152
MIEQ01000078
Gammaproteobacteria
Motiliproteus sp. MSK22-1 [MIEQ]
720
644
-
Arg
CCG
[ENA]
¡û
>W1711666784
MRCI01000001
Gammaproteobacteria
Neptunomonas phycophila [MRCI]
116390
116466
+
Arg
CCG
[ENA]
¡û
>W1711666853
MRCJ01000004
Gammaproteobacteria
Neptunomonas phycophila [MRCJ]
322054
321978
-
Arg
CCG
[ENA]
¡û
>W131175777
ARJM01000068
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
114420
114344
-
Arg
CCG
[ENA]
¡û
>W131179619
ARMN01000026
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
397455
397379
-
Arg
CCG
[ENA]
¡û
>W131222069
AUAZ01000006
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
137924
137848
-
Arg
CCG
[ENA]
¡û
>w015074
AAOW01000001
Gammaproteobacteria
Neptuniibacter caesariensis MED92 [AAOW]
39123
39201
+
Arg
CCG
[ENA]
¡û
>WENV182541172
OJAS01000793
[OJAS] seawater metagenome; Sea water
2399
2475
+
Arg
CCG
[ENA]
¡û
>WENV182556759
OJDH01000053
[OJDH] seawater metagenome; Sea water
54893
54817
-
Arg
CCG
[ENA]
¡û
>WENV183057489
OLHL01003814
[OLHL] seawater metagenome; Sea water
2285
2209
-
Arg
CCG
[ENA]
¡û
>WENV183717375
PDWJ01000824
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
42640
42716
+
Arg
CCG
[ENA]
¡û
>WENV170112061
CEGC01005671
[CEGC] microbial mat metagenome; grass silage
628
552
-
Arg
CCG
[ENA]
¡û
>WENV170112170
CEGD01006355
[CEGD] microbial mat metagenome; grass silage
345
269
-
Arg
CCG
[ENA]
¡û
>WENV170112286
CEGE01001049
[CEGE] microbial mat metagenome; grass silage
247
171
-
Arg
CCG
[ENA]
¡û
>WENV170112501
CEGF01001753
[CEGF] microbial mat metagenome; grass silage
633
709
+
Arg
CCG
[ENA]
¡û
>WENV170262855
CERC01001328
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8086
8010
-
Arg
CCG
[ENA]
¡û
>WENV170265528
CERD01208566
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
584
660
+
Arg
CCG
[ENA]
¡û
>WENV170298322
CESF01090500
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
175
99
-
Arg
CCG
[ENA]
¡û
>WENV170921462
MDTG01014823
[MDTG] marine metagenome; seawater
1179
1103
-
Arg
CCG
[ENA]
¡û
>W1810400711
PYGI01000011
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
18110
18034
-
Arg
CCG
[ENA]
¡û
>W2010683134
JACEMT010000051
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
110085
110161
+
Arg
CCG
[ENA]
¡û
>W2011522279
SACQ01000002
Gammaproteobacteria
Neptunomonas sp. HPM-16 [SACQ]
336009
335933
-
Arg
CCG
[ENA]
¡û
>W2011633661
SMFU01000009
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
596936
596860
-
Arg
CCG
[ENA]
¡û
>W2011670870
SPLL01000004
Gammaproteobacteria
Neptunomonas sp. XY-337 [SPLL]
132887
132811
-
Arg
CCG
[ENA]
¡û
>W2110269377
JACVEW010000018
Gammaproteobacteria
Marinobacterium alkalitolerans AK62 [JACVEW]
44803
44879
+
Arg
CCG
[ENA]
¡û
>W2110313365
JADEYS010000001
Gammaproteobacteria
Pontibacterium sp. N1Y112 [JADEYS]
122398
122474
+
Arg
CCG
[ENA]
¡û
>W2110496081
JAFFZO010000025
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
35022
35098
+
Arg
CCG
[ENA]
¡û
>W2110496145
JAFFZP010000022
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
34760
34836
+
Arg
CCG
[ENA]
¡û
>W2110602342
JAHHDZ010000001
Gammaproteobacteria
Neptunomonas phycophila 3B05 [JAHHDZ]
793862
793786
-
Arg
CCG
[ENA]
¡û
>W2110639305
JAHQZT010000023
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
20189
20265
+
Arg
CCG
[ENA]
¡û
>W2110683920
JAILYN010000012
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
94175
94251
+
Arg
CCG
[ENA]
¡û
>C211000072
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
199874
199950
+
Arg
CCG
-
¡û
>C211032065
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
60029
60105
+
Arg
CCG
-
¡û
>C231011456
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
239044
239120
+
Arg
CCG
-
¡û
>C231019746
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
199876
199952
+
Arg
CCG
-
¡û
>C231019859
AP025763
Gammaproteobacteria
Neptuniibacter sp. PT1 [AP025763]
3678058
3677982
-
Arg
CCG
-
¡û
>C231131078
CP073347
Gammaproteobacteria
Marinobacterium rhizophilum D13-1 [CP073347]
3408898
3408822
-
Arg
CCG
-
¡û
>C231313069
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
65642
65718
+
Arg
CCG
-
¡û
>C241010930
AP027292
Gammaproteobacteria
Neptuniibacter halophilus LMG 25378 [AP027292]
1932697
1932773
+
Arg
CCG
-
¡û
>W11170421
AFPL01000043
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
22093
22017
-
Arg
CCG
[ENA]
¡û
>C161091133
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
209517
209593
+
Arg
CCG
[Ensembl]
¡û
>W1610062731
BCNS01000174
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
1342
1418
+
Arg
CCG
[ENA]
¡û
>W1610917254
LSMR01000200
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
8464
8540
+
Arg
CCG
[ENA]
¡û
>W1610940076
LUTR01000035
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
2586
2510
-
Arg
CCG
[ENA]
¡û
>W1610940117
LUTS01000005
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
175947
176023
+
Arg
CCG
[ENA]
¡û
>W1710060207
BCNS01000174
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
1342
1418
+
Arg
CCG
[ENA]
¡û
>W1710533774
FNRJ01000015
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
32627
32551
-
Arg
CCG
[ENA]
¡û
>W1710539747
FNVQ01000004
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
423391
423315
-
Arg
CCG
[ENA]
¡û
>W1710551400
FOGB01000002
Gammaproteobacteria
Amphritea atlantica [FOGB]
336619
336695
+
Arg
CCG
[ENA]
¡û
>W1710596411
FTMN01000011
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
22143
22067
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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