This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.310699 (17 seq.)
>w021677
AAVV01000017
Gammaproteobacteria
marine gamma proteobacterium HTCC2080 [AAVV]
4092
4015
-
His
GTG
[ENA]
¡û
>WENV180104098
OAPB01081273
[OAPB] marine metagenome; Sterile flask
281
206
-
His
GTG
[ENA]
¡û
>WENV180113178
OAPQ01007699
[OAPQ] marine metagenome; ENVO: 00002149
859
784
-
His
GTG
[ENA]
¡û
>WENV180362790
OBNX01040204
[OBNX] marine metagenome; ENVO:00002010
450
525
+
His
GTG
[ENA]
¡û
>WENV180383275
OBOU01024123
[OBOU] marine metagenome; ENV:00002010
265
190
-
His
GTG
[ENA]
¡û
>WENV180387598
OBPF01019684
[OBPF] marine metagenome; Sterile flask
203
128
-
His
GTG
[ENA]
¡û
>WENV180388456
OBPH01007724
[OBPH] marine metagenome; Sterile flask
621
546
-
His
GTG
[ENA]
¡û
>WENV180389068
OBPI01026085
[OBPI] marine metagenome; Sterile flask
135
60
-
His
GTG
[ENA]
¡û
>WENV180389326
OBPJ01002576
[OBPJ] marine metagenome; seawater
833
908
+
His
GTG
[ENA]
¡û
>WENV180390627
OBPL01003994
[OBPL] marine metagenome; Sterivex filter
189
114
-
His
GTG
[ENA]
¡û
>WENV180392462
OBPO01086034
[OBPO] marine metagenome; seawater
222
297
+
His
GTG
[ENA]
¡û
>WENV180395025
OBPT01000567
[OBPT] marine metagenome; ENVO:00002010 seawater
2087
2012
-
His
GTG
[ENA]
¡û
>WENV180399666
OBQO01010043
[OBQO] marine metagenome; ENVO:00002010
521
596
+
His
GTG
[ENA]
¡û
>WENV182545698
OJBN01015904
[OJBN] seawater metagenome; Sea water
586
661
+
His
GTG
[ENA]
¡û
>WENV182556061
OJDG01000048
[OJDG] seawater metagenome; Sea water
3532
3457
-
His
GTG
[ENA]
¡û
>WENV182585020
OJHH01000188
[OJHH] seawater metagenome; Sea water
1920
1845
-
His
GTG
[ENA]
¡û
>WENV170535916
CEWP01123884
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1069
994
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK