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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.310808 (60 seq.)
>WENV180096100
MTBK01109637
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
202
276
+
Ile
GAT
[ENA]
¡û
>WENV180297652
OBJA01058106
[OBJA] soil metagenome; sediment, water from around vicinity
195
270
+
Ile
GAT
[ENA]
¡û
>WENV183514223
OMKS01013937
[OMKS] sediment metagenome; hot spring sediment
1
75
+
Ile
GAT
[ENA]
¡û
>WENV183515499
OMKS01068523
[OMKS] sediment metagenome; hot spring sediment
76
2
-
Ile
GAT
[ENA]
¡û
>WENV183720839
PDWJ01047105
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1703
1629
-
Ile
GAT
[ENA]
¡û
>WENV170112284
CEGE01000999
[CEGE] microbial mat metagenome; grass silage
3588
3514
-
Ile
GAT
[ENA]
¡û
>WENV170704512
LLEK01002164
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
190
114
-
Ile
GAT
[ENA]
¡û
>WENV170724151
LSQX01295404
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
301
375
+
Ile
GAT
[ENA]
¡û
>WENV170968106
MTKW01006176
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2756
2682
-
Ile
GAT
[ENA]
¡û
>WENV170974298
MTKY01057090
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3411
3337
-
Ile
GAT
[ENA]
¡û
>W1911748617
QWET01000043
Bacteroidota
Mariniphaga sediminis SY21 [QWET]
3697
3623
-
Ile
GAT
[ENA]
¡û
>W1810464159
QAAD01000045
Bacteroidota
Mangrovibacterium marinum DSM 28823 [QAAD]
2128
2202
+
Ile
GAT
[ENA]
¡û
>W2010133346
BLAU01000001
Bacteroidota
Prolixibacter denitrificans MIC1-1 [BLAU]
1516207
1516281
+
Ile
GAT
[ENA]
¡û
>W2010133351
BLAU01000001
Bacteroidota
Prolixibacter denitrificans MIC1-1 [BLAU]
1934582
1934658
+
Ile
GAT
[ENA]
¡û
>W2010133365
BLAU01000001
Bacteroidota
Prolixibacter denitrificans MIC1-1 [BLAU]
4673300
4673224
-
Ile
GAT
[ENA]
¡û
>W2010133389
BLAU01000001
Bacteroidota
Prolixibacter denitrificans MIC1-1 [BLAU]
766160
766084
-
Ile
GAT
[ENA]
¡û
>W2010133403
BLAV01000001
Bacteroidota
Prolixibacter sp. NT017 [BLAV]
228797
228871
+
Ile
GAT
[ENA]
¡û
>W2010133422
BLAV01000001
Bacteroidota
Prolixibacter sp. NT017 [BLAV]
4949512
4949586
+
Ile
GAT
[ENA]
¡û
>W2010133433
BLAV01000001
Bacteroidota
Prolixibacter sp. NT017 [BLAV]
4213457
4213383
-
Ile
GAT
[ENA]
¡û
>W2010133450
BLAV01000001
Bacteroidota
Prolixibacter sp. NT017 [BLAV]
3332286
3332212
-
Ile
GAT
[ENA]
¡û
>W2010133537
BLAX01000001
Bacteroidota
Prolixibacter bellariivorans JCM 13498 [BLAX]
2558914
2558990
+
Ile
GAT
[ENA]
¡û
>W2010133542
BLAX01000001
Bacteroidota
Prolixibacter bellariivorans JCM 13498 [BLAX]
2955487
2955563
+
Ile
GAT
[ENA]
¡û
>W2010133564
BLAX01000001
Bacteroidota
Prolixibacter bellariivorans JCM 13498 [BLAX]
1821475
1821399
-
Ile
GAT
[ENA]
¡û
>W2010133579
BLAX01000001
Bacteroidota
Prolixibacter bellariivorans JCM 13498 [BLAX]
932274
932198
-
Ile
GAT
[ENA]
¡û
>W2010521028
JAANIG010000077
Bacteroidota
Bacteroidales bacterium M08MB [JAANIG]
1818
1892
+
Ile
GAT
[ENA]
¡û
>W2011317546
QWET01000043
Bacteroidota
Mariniphaga sediminis SY21 [QWET]
3697
3623
-
Ile
GAT
[ENA]
¡û
>W2011354234
RAPN01000008
Bacteroidota
Mangrovibacterium diazotrophicum DSM 27148 [RAPN]
3798
3724
-
Ile
GAT
[ENA]
¡û
>W2011647768
SNWI01000015
Bacteroidota
Sunxiuqinia elliptica 114D [SNWI]
1850
1924
+
Ile
GAT
[ENA]
¡û
>W2011647770
SNWI01000015
Bacteroidota
Sunxiuqinia elliptica 114D [SNWI]
7669
7743
+
Ile
GAT
[ENA]
¡û
>W2011648387
SNWV01000005
Bacteroidota
Sunxiuqinia elliptica 114D_o [SNWV]
1850
1924
+
Ile
GAT
[ENA]
¡û
>W2011648389
SNWV01000005
Bacteroidota
Sunxiuqinia elliptica 114D_o [SNWV]
7669
7743
+
Ile
GAT
[ENA]
¡û
>W2012456860
WVEM01000031
Bacteroidota
Sunxiuqinia sp. RC1_OXG_1F [WVEM]
1844
1918
+
Ile
GAT
[ENA]
¡û
>C211384714
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
85950
86024
+
Ile
GAT
-
¡û
>C211384716
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
91167
91241
+
Ile
GAT
-
¡û
>C211384764
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
3203963
3204037
+
Ile
GAT
-
¡û
>C211384776
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
3408918
3408992
+
Ile
GAT
-
¡û
>C211384795
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
4273014
4273088
+
Ile
GAT
-
¡û
>C211384797
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
4278395
4278469
+
Ile
GAT
-
¡û
>C211384803
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
3922448
3922374
-
Ile
GAT
-
¡û
>C211384805
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
3917230
3917156
-
Ile
GAT
-
¡û
>C211384807
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
3903781
3903707
-
Ile
GAT
-
¡û
>C211384809
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
3879308
3879234
-
Ile
GAT
-
¡û
>C211384813
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
3752625
3752551
-
Ile
GAT
-
¡û
>C211384815
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
3747408
3747334
-
Ile
GAT
-
¡û
>C211384817
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
3742191
3742117
-
Ile
GAT
-
¡û
>C211393454
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
3340990
3341064
+
Ile
GAT
-
¡û
>C211393456
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
3346228
3346302
+
Ile
GAT
-
¡û
>C211393458
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
3368206
3368280
+
Ile
GAT
-
¡û
>C211393462
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
3523479
3523553
+
Ile
GAT
-
¡û
>C211393464
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
3528717
3528791
+
Ile
GAT
-
¡û
>C211393469
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
3821432
3821506
+
Ile
GAT
-
¡û
>C211393471
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
3826670
3826744
+
Ile
GAT
-
¡û
>C211393518
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
2971418
2971344
-
Ile
GAT
-
¡û
>C211393520
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
2966180
2966106
-
Ile
GAT
-
¡û
>C211393522
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
2960942
2960868
-
Ile
GAT
-
¡û
>C211393532
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
2669658
2669584
-
Ile
GAT
-
¡û
>W1511698617
LGIA01000015
Bacteroidota
Sunxiuqinia dokdonensis SK [LGIA]
3658
3582
-
Ile
GAT
[ENA]
¡û
>W1710561107
FONW01000022
Bacteroidota
Sunxiuqinia elliptica [FONW]
3672
3598
-
Ile
GAT
[ENA]
¡û
>W1710583087
FQUM01000029
Bacteroidota
Mariniphaga anaerophila [FQUM]
3585
3509
-
Ile
GAT
[ENA]
¡û
>W1710588264
FQZE01000065
Bacteroidota
Tangfeifania diversioriginum [FQZE]
3858
3782
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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