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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.310822 (55 seq.)
>W1712040817
NFKP01000068
Bacillota
Anaerotruncus colihominis [NFKP]
434
359
-
Lys
CTT
[ENA]
¡û
>WENV180290844
OBIU01132425
[OBIU] human gut metagenome; human gut
212
137
-
Lys
CTT
[ENA]
¢þ
>WENV180442212
OBWW01019343
[OBWW] human gut metagenome; faeces
382
457
+
Lys
CTT
[ENA]
¢þ
>WENV180541360
OCHR01110429
[OCHR] human gut metagenome; human gut
165
90
-
Lys
CTT
[ENA]
¢þ
>WENV180633886
OCRA01088642
[OCRA] human gut metagenome; human gut
237
312
+
Lys
CTT
[ENA]
¢þ
>WENV180651229
OCSZ01089126
[OCSZ] human gut metagenome; human gut
173
248
+
Lys
CTT
[ENA]
¢þ
>WENV181266453
OFGB01095301
[OFGB] mouse gut metagenome; faeces
97
22
-
Lys
CTT
[ENA]
¢þ
>WENV181289316
OFGZ01046001
[OFGZ] mouse gut metagenome; faeces
163
88
-
Lys
CTT
[ENA]
¢þ
>WENV181343970
OFMJ01033564
[OFMJ] human gut metagenome; human gut
375
450
+
Lys
CTT
[ENA]
¢þ
>WENV181363939
OFOU01007121
[OFOU] human gut metagenome; human gut
381
456
+
Lys
CTT
[ENA]
¢þ
>W08003314
ABGD02000008
Bacillota
Anaerotruncus colihominis DSM 17241 [ABGD]
263
338
+
Lys
CTT
[ENA]
¡û
>W08003325
ABGD02000015
Bacillota
Anaerotruncus colihominis DSM 17241 [ABGD]
436
364
-
Lys
CTT
[ENA]
¡û
>W08003333
ABGD02000022
Bacillota
Anaerotruncus colihominis DSM 17241 [ABGD]
67088
67016
-
Lys
CTT
[ENA]
¡û
>W08003336
ABGD02000023
Bacillota
Anaerotruncus colihominis DSM 17241 [ABGD]
304
232
-
Lys
CTT
[ENA]
¡û
>WENV181886630
OGXK01055621
[OGXK] human gut metagenome; faeces
264
189
-
Lys
CTT
[ENA]
¢þ
>WENV181998933
OHAV01009967
[OHAV] human gut metagenome; feces
434
509
+
Lys
CTT
[ENA]
¢þ
>WENV182030600
OHCR01032545
[OHCR] human gut metagenome; feces
72
147
+
Lys
CTT
[ENA]
¢þ
>WENV182089534
OHGZ01024913
[OHGZ] human gut metagenome; feces
561
486
-
Lys
CTT
[ENA]
¢þ
>WENV182204804
OHPR01006752
[OHPR] human gut metagenome; feces
1755
1680
-
Lys
CTT
[ENA]
¢þ
>WENV182216122
OHQM01020890
[OHQM] human gut metagenome; feces
510
435
-
Lys
CTT
[ENA]
¢þ
>WENV182369785
OICR01031638
[OICR] human gut metagenome; feces
511
586
+
Lys
CTT
[ENA]
¢þ
>WENV182383392
OIDT01001021
[OIDT] human gut metagenome; feces
87
162
+
Lys
CTT
[ENA]
¢þ
>C08011075
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1702286
1702214
-
Lys
CTT
[Ensembl]
¡û
>WENV182748514
OJQW01028717
[OJQW] human gut metagenome; stool sample
298
223
-
Lys
CTT
[ENA]
¢þ
>WENV182825052
OKCG01001550
[OKCG] human gut metagenome; human gut
381
456
+
Lys
CTT
[ENA]
¢þ
>WENV183753584
PPYE01068223
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
731
656
-
Lys
CTT
[ENA]
¢þ
>WENV170026318
CDTW01033856
[CDTW] gut metagenome; human stools
210
285
+
Lys
CTT
[ENA]
¢þ
>WENV170062573
CDZJ01020303
[CDZJ] gut metagenome; human stools
603
678
+
Lys
CTT
[ENA]
¢þ
>C191108110
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1165766
1165841
+
Lys
CTT
-
¡û
>W09133541
ACPF01000036
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
21596
21521
-
Lys
CTT
[ENA]
¡û
>W1910504118
FYDE01000005
Bacillota
Marasmitruncus massiliensis Marseille-P3646 [FYDE]
159562
159487
-
Lys
CTT
[ENA]
¡û
>W1810912929
QVME01000002
Bacillota
Anaerotruncus colihominis TF05-12AC [QVME]
81
6
-
Lys
CTT
[ENA]
¡û
>W10105947
ACXY01000023
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
20991
20916
-
Lys
CTT
[ENA]
¡û
>C10113438
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
692775
692850
+
Lys
CTT
[Ensembl]
¡û
>W11108270
ACXY01000023
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
20991
20916
-
Lys
CTT
[ENA]
¡û
>C11122502
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1694499
1694424
-
Lys
CTT
[Ensembl]
¡û
>C11123235
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
737724
737799
+
Lys
CTT
[Ensembl]
¡û
>W1511578287
LARB01000044
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
1218
1143
-
Lys
CTT
[ENA]
¡û
>W1511578728
LARB01000193
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
1088
1013
-
Lys
CTT
[ENA]
¡û
>W11152682
AEYS01000018
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
993
918
-
Lys
CTT
[ENA]
¡û
>W1610043662
BAZY01000019
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
5181
5106
-
Lys
CTT
[ENA]
¡û
>W1610103644
CZBE01000013
Bacillota
Anaerotruncus colihominis [CZBE]
85845
85920
+
Lys
CTT
[ENA]
¡û
>W121068120
AJUD01000012
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
15354
15429
+
Lys
CTT
[ENA]
¡û
>W1610461217
FKLA01000006
Bacillota
Anaerotruncus rubiinfantis MT15 [FKLA]
115388
115313
-
Lys
CTT
[ENA]
¡û
>W1610461262
FKLA01000009
Bacillota
Anaerotruncus rubiinfantis MT15 [FKLA]
183418
183343
-
Lys
CTT
[ENA]
¡û
>W1730040476
NFKQ01000076
Bacillota
Anaerotruncus colihominis [NFKQ]
71
-2
-
Lys
CTT
[ENA]
¡û
>W1710040822
BAZY01000019
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
5181
5106
-
Lys
CTT
[ENA]
¡û
>W1710106348
CZBE01000013
Bacillota
Anaerotruncus colihominis [CZBE]
85845
85920
+
Lys
CTT
[ENA]
¡û
>W1710460491
FKLA01000006
Bacillota
Anaerotruncus rubiinfantis MT15 [FKLA]
115388
115313
-
Lys
CTT
[ENA]
¡û
>W1710460536
FKLA01000009
Bacillota
Anaerotruncus rubiinfantis MT15 [FKLA]
183418
183343
-
Lys
CTT
[ENA]
¡û
>W1710515326
FNBS01000038
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
10058
10133
+
Lys
CTT
[ENA]
¡û
>W1710546472
FOCG01000001
Bacillota
Hydrogenoanaerobacterium saccharovorans [FOCG]
2189179
2189104
-
Lys
CTT
[ENA]
¡û
>W1710546503
FOCG01000003
Bacillota
Hydrogenoanaerobacterium saccharovorans [FOCG]
17
92
+
Lys
CTT
[ENA]
¡û
>W1710546515
FOCG01000010
Bacillota
Hydrogenoanaerobacterium saccharovorans [FOCG]
346
271
-
Lys
CTT
[ENA]
¡û
>W1710560403
FONI01000076
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
521
446
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK