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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.310822 (8 seq.)
>WENV180370228
OBOH01048912
[OBOH] marine metagenome; ENVO:00002010
212
137
-
Arg
TCT
[ENA]
¡û
>WENV181840288
OGVP01000021
[OGVP] freshwater metagenome; freshwater
15011
15086
+
Arg
TCT
[ENA]
¡û
>WENV181850377
OGWD01000040
[OGWD] freshwater metagenome; freshwater
10608
10683
+
Arg
TCT
[ENA]
¡û
>WENV181850746
OGWD01015980
[OGWD] freshwater metagenome; freshwater
197
122
-
Arg
TCT
[ENA]
¡û
>WENV181852831
OGWH01004897
[OGWH] freshwater metagenome; freshwater
1504
1429
-
Arg
TCT
[ENA]
¡û
>WENV181852909
OGWH01008421
[OGWH] freshwater metagenome; freshwater
97
172
+
Arg
TCT
[ENA]
¡û
>WENV181853236
OGWI01000669
[OGWI] freshwater metagenome; freshwater
339
264
-
Arg
TCT
[ENA]
¡û
>WENV181853958
OGWJ01002997
[OGWJ] freshwater metagenome; freshwater
276
201
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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