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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.311058 (79 seq.)
>W1711128112
LURJ01000031
Cyanobacteriota
Synechococcus sp. REDSEA-S01_B1 [LURJ]
20111
20038
-
Pro
GGG
[ENA]
¡û
>W1711128124
LURK01000004
Cyanobacteriota
Synechococcus sp. REDSEA-S02_B4 [LURK]
72501
72574
+
Pro
GGG
[ENA]
¡û
>WENV011598
AACY020315281
Marine microbial communities from Global Ocean Sampling (GOS)
1184
1108
-
Pro
GGG
[ENA]
>C025110
CP000110
Cyanobacteriota
Synechococcus sp. CC9605 [CP000110]
1078099
1078026
-
Pro
GGG
[Ensembl]
¡û
>WENV180102260
OAOY01002148
[OAOY] marine metagenome; Water
825
752
-
Pro
GGG
[ENA]
¡û
>WENV180104944
OAPD01000155
[OAPD] marine metagenome; 2010
4123
4050
-
Pro
GGG
[ENA]
¡û
>WENV180106847
OAPF01006705
[OAPF] marine metagenome; ENVO:00002010
772
845
+
Pro
GGG
[ENA]
¡û
>WENV180107558
OAPH01000019
[OAPH] marine metagenome; seawater
8743
8816
+
Pro
GGG
[ENA]
¡û
>WENV180112225
OAPP01004590
[OAPP] marine metagenome; Surface water
455
528
+
Pro
GGG
[ENA]
¡û
>WENV180368399
OBOF01076620
[OBOF] marine metagenome; ENVO:00002010
308
381
+
Pro
GGG
[ENA]
¡û
>WENV180369160
OBOG01037854
[OBOG] marine metagenome; seawater
267
340
+
Pro
GGG
[ENA]
¡û
>WENV180373427
OBOJ01000865
[OBOJ] marine metagenome; seawater
1959
2032
+
Pro
GGG
[ENA]
¡û
>WENV180379069
OBOP01002045
[OBOP] marine metagenome; water
1311
1238
-
Pro
GGG
[ENA]
¡û
>WENV180589062
OCOR01000004
[OCOR] marine metagenome; ENVO:00002042
27164
27091
-
Pro
GGG
[ENA]
¡û
>WENV180594212
OCOZ01000790
[OCOZ] marine metagenome; vv
1870
1943
+
Pro
GGG
[ENA]
¡û
>WENV180687378
OCZA010004495
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
523
450
-
Pro
GGG
[ENA]
¡û
>WENV019934
AACY020542782
Marine microbial communities from Global Ocean Sampling (GOS)
1521
1597
+
Pro
GGG
[ENA]
>WENV170163678
CEOM01163581
[CEOM] marine metagenome genome assembly TARA_004_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
272
345
+
Pro
GGG
[ENA]
¡û
>WENV170179631
CEOW01003546
[CEOW] marine metagenome genome assembly TARA_058_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6440
6513
+
Pro
GGG
[ENA]
¡û
>WENV170484851
CEVN01052115
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
235
162
-
Pro
GGG
[ENA]
¡û
>WENV170579337
FUFK010038666
[FUFK] metagenome; unknown
20200
20127
-
Pro
GGG
[ENA]
¡û
>WENV170587942
FUFK010529240
[FUFK] metagenome; unknown
800
727
-
Pro
GGG
[ENA]
¡û
>WENV170620809
FUWD013040344
[FUWD] metagenome; unknown
716
643
-
Pro
GGG
[ENA]
¡û
>WENV170628958
FUWD013257444
[FUWD] metagenome; unknown
716
643
-
Pro
GGG
[ENA]
¡û
>WENV170728019
LULE01006949
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
200
273
+
Pro
GGG
[ENA]
¡û
>WENV170757175
LUMQ01000120
[LUMQ] marine metagenome; Red Sea water column Station 12 - depth 25m
2004
2077
+
Pro
GGG
[ENA]
¡û
>WENV170758155
LUMR01000001
[LUMR] marine metagenome; Red Sea water column Station 12 - depth 10m
20111
20038
-
Pro
GGG
[ENA]
¡û
>WENV170760583
LUMT01026730
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
192
265
+
Pro
GGG
[ENA]
¡û
>WENV170851738
MDTA01136938
[MDTA] marine metagenome; seawater
77
2
-
Pro
GGG
[ENA]
¡û
>WENV170852242
MDTA01146466
[MDTA] marine metagenome; seawater
9720
9645
-
Pro
GGG
[ENA]
¡û
>WENV170893463
MDTD01052044
[MDTD] marine metagenome; seawater
23
96
+
Pro
GGG
[ENA]
¡û
>W09132657
ACNY01000005
Cyanobacteriota
Synechococcus sp. WH 8109 [ACNY]
446795
446722
-
Pro
GGG
[ENA]
¡û
>W1810519590
QCFH01000003
Cyanobacteriota
Prochlorococcus sp. AG-363-C02 [QCFH]
86524
86449
-
Pro
GGG
[ENA]
¡û
>W1810519745
QCFN01000013
Cyanobacteriota
Prochlorococcus sp. AG-363-J23 [QCFN]
33656
33731
+
Pro
GGG
[ENA]
¡û
>W1810519771
QCFO01000008
Cyanobacteriota
Prochlorococcus sp. AG-363-K07 [QCFO]
49101
49028
-
Pro
GGG
[ENA]
¡û
>W1810522921
QCJW01000009
Cyanobacteriota
Prochlorococcus sp. AG-409-G20 [QCJW]
36115
36190
+
Pro
GGG
[ENA]
¡û
>W1810523070
QCKC01000017
Cyanobacteriota
Prochlorococcus sp. AG-409-J19 [QCKC]
10765
10840
+
Pro
GGG
[ENA]
¡û
>W1810523121
QCKE01000007
Cyanobacteriota
Prochlorococcus sp. AG-409-K04 [QCKE]
64078
64153
+
Pro
GGG
[ENA]
¡û
>W1810523314
QCKL01000012
Cyanobacteriota
Prochlorococcus sp. AG-409-O23 [QCKL]
9270
9197
-
Pro
GGG
[ENA]
¡û
>W1810526288
QCPC01000027
Cyanobacteriota
Prochlorococcus sp. AG-436-C13 [QCPC]
1317
1239
-
Pro
GGG
[ENA]
¡û
>W1810527855
QCRX01000013
Cyanobacteriota
Prochlorococcus sp. AG-463-P14 [QCRX]
25264
25191
-
Pro
GGG
[ENA]
¡û
>W1810528057
QCSI01000052
Cyanobacteriota
Synechococcus sp. AG-670-A04 [QCSI]
894
821
-
Pro
GGG
[ENA]
¡û
>W1810528096
QCSK01000004
Cyanobacteriota
Synechococcus sp. AG-670-A19 [QCSK]
7251
7178
-
Pro
GGG
[ENA]
¡û
>W1810528134
QCSL01000023
Cyanobacteriota
Synechococcus sp. AG-670-B23 [QCSL]
34469
34542
+
Pro
GGG
[ENA]
¡û
>W1810528232
QCSP01000001
Cyanobacteriota
Synechococcus sp. AG-670-G20 [QCSP]
16801
16874
+
Pro
GGG
[ENA]
¡û
>WENV028103
AACY021094907
Marine microbial communities from Global Ocean Sampling (GOS)
297
373
+
Pro
GGG
[ENA]
>C151009112
CP006271
Cyanobacteriota
Synechococcus sp. KORDI-52 [CP006271]
1950712
1950785
+
Pro
GGG
[Ensembl]
¡û
>C151013903
CP006882
Cyanobacteriota
Synechococcus sp. WH 8109 [CP006882]
1161010
1161083
+
Pro
GGG
[Ensembl]
¡û
>W2011542210
SDBW01000006
Cyanobacteriota
Synechococcus sp. HB1133 [SDBW]
27664
27591
-
Pro
GGG
[ENA]
¡û
>W2011799950
UCND01000015
Cyanobacteriota
Synechococcus sp. P1 [UCND]
257583
257510
-
Pro
GGG
[ENA]
¡û
>W2011800145
UCNI01000001
Cyanobacteriota
Synechococcus sp. P1 [UCNI]
361748
361675
-
Pro
GGG
[ENA]
¡û
>W2011800338
UCNM01000010
Cyanobacteriota
Synechococcus sp. P1 [UCNM]
126861
126788
-
Pro
GGG
[ENA]
¡û
>W2011800560
UCNR01000015
Cyanobacteriota
Synechococcus sp. P1 [UCNR]
49987
49914
-
Pro
GGG
[ENA]
¡û
>W2011800686
UCNU01000017
Cyanobacteriota
Synechococcus sp. P1 [UCNU]
548712
548785
+
Pro
GGG
[ENA]
¡û
>W2011800716
UCNV01000008
Cyanobacteriota
Synechococcus sp. P1 [UCNV]
172181
172108
-
Pro
GGG
[ENA]
¡û
>W2011800749
UCNW01000008
Cyanobacteriota
Synechococcus sp. P1 [UCNW]
201365
201438
+
Pro
GGG
[ENA]
¡û
>C211072354
CP047933
Cyanobacteriota
Synechococcus sp. A15-60 [CP047933]
1603754
1603829
+
Pro
GGG
-
¡û
>C211072443
CP047937
Cyanobacteriota
Synechococcus sp. TAK9802 [CP047937]
1216066
1216139
+
Pro
GGG
-
¡û
>C211072503
CP047938
Cyanobacteriota
Synechococcus sp. A15-44 [CP047938]
1088600
1088527
-
Pro
GGG
-
¡û
>C211072640
CP047941
Cyanobacteriota
Synechococcus sp. NOUM97013 [CP047941]
1066270
1066195
-
Pro
GGG
-
¡û
>C211072771
CP047944
Cyanobacteriota
Synechococcus sp. RS9907 [CP047944]
1075843
1075770
-
Pro
GGG
-
¡û
>C211072936
CP047949
Cyanobacteriota
Synechococcus sp. RS9902 [CP047949]
1524144
1524217
+
Pro
GGG
-
¡û
>C211072993
CP047950
Cyanobacteriota
Synechococcus sp. A15-62 [CP047950]
980677
980604
-
Pro
GGG
-
¡û
>C211073037
CP047951
Cyanobacteriota
Synechococcus sp. PROS-U-1 [CP047951]
1109301
1109228
-
Pro
GGG
-
¡û
>C211073167
CP047954
Cyanobacteriota
Synechococcus sp. M16.1 [CP047954]
916989
916916
-
Pro
GGG
-
¡û
>C211073284
CP047957
Cyanobacteriota
Synechococcus sp. A18-25c [CP047957]
1576909
1576984
+
Pro
GGG
-
¡û
>W2110777979
VTKW01000018
Cyanobacteriota
Synechococcus sp. MU1650 [VTKW]
2173
2246
+
Pro
GGG
[ENA]
¡û
>W2110777989
VTKY01000001
Cyanobacteriota
Synechococcus sp. MU1643 [VTKY]
628964
629037
+
Pro
GGG
[ENA]
¡û
>W2110778032
VTKZ01000002
Cyanobacteriota
Synechococcus sp. MU1642 [VTKZ]
198164
198237
+
Pro
GGG
[ENA]
¡û
>W2110778075
VTLA01000001
Cyanobacteriota
Synechococcus sp. MU1625 [VTLA]
358229
358156
-
Pro
GGG
[ENA]
¡û
>W2110778106
VTLB01000001
Cyanobacteriota
Synechococcus sp. MU1617 [VTLB]
308240
308313
+
Pro
GGG
[ENA]
¡û
>W2110778149
VTLC01000001
Cyanobacteriota
Synechococcus sp. MU1611 [VTLC]
731983
732056
+
Pro
GGG
[ENA]
¡û
>W2110778207
VTLD01000020
Cyanobacteriota
Synechococcus sp. PH41509 [VTLD]
118986
119059
+
Pro
GGG
[ENA]
¡û
>W2110778263
VTLE01000010
Cyanobacteriota
Synechococcus sp. HBA1120 [VTLE]
121357
121430
+
Pro
GGG
[ENA]
¡û
>W2110778304
VTLF01000006
Cyanobacteriota
Synechococcus sp. HB1133 [VTLF]
27664
27591
-
Pro
GGG
[ENA]
¡û
>WENV072029
AACY023868896
Marine microbial communities from Global Ocean Sampling (GOS)
907
983
+
Pro
GGG
[ENA]
>WENV075916
AACY024063288
Marine microbial communities from Global Ocean Sampling (GOS)
640
716
+
Pro
GGG
[ENA]
>W1610939226
LURJ01000031
Cyanobacteriota
Synechococcus sp. REDSEA-S01_B1 [LURJ]
20111
20038
-
Pro
GGG
[ENA]
¡û
>W1610939238
LURK01000004
Cyanobacteriota
Synechococcus sp. REDSEA-S02_B4 [LURK]
72501
72574
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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