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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.311150 (99 seq.)
>W1710923835
LOCK01000073
Bacillota
Desulfitobacterium hafniense [LOCK]
223
148
-
Ala
TGC
[ENA]
¡û
>W1711312253
MASS01000046
Bacillota
Desulfosporosinus sp. BG [MASS]
164
239
+
Ala
TGC
[ENA]
¡û
>W1711342439
MCHF01000006
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
274
349
+
Ala
TGC
[ENA]
¡û
>W1711510603
MLBF01000192
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
313
388
+
Ala
TGC
[ENA]
¡û
>W1711926264
NADJ01000015
Bacillota
Desulfosporosinus sp. FKB [NADJ]
160990
160915
-
Ala
TGC
[ENA]
¡û
>W1711932765
NAHZ01000033
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
183716
183791
+
Ala
TGC
[ENA]
¡û
>W131162704
AQZD01000005
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
354983
355058
+
Ala
TGC
[ENA]
¡û
>C007804
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
1740551
1740626
+
Ala
TGC
[Ensembl]
¡û
>C007822
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
2314781
2314706
-
Ala
TGC
[Ensembl]
¡û
>WENV180268029
OBEQ011921975
[OBEQ] groundwater metagenome; groundwater
202
127
-
Ala
TGC
[ENA]
¡û
>w002211
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
46932
46855
-
Ala
TGC
[ENA]
¡û
>w002161
AAAW04000003
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
404750
404673
-
Ala
TGC
[ENA]
¡û
>w002148
AAAW04000001
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
517433
517356
-
Ala
TGC
[ENA]
¡û
>WENV180649737
OCSK01126786
[OCSK] human gut metagenome; human gut
177
102
-
Ala
TGC
[ENA]
¡û
>WENV180748203
ODHN01079953
[ODHN] human metagenome; G_DNA_Stool
347
272
-
Ala
TGC
[ENA]
¡û
>WENV180799982
ODJC01048363
[ODJC] human metagenome; G_DNA_Stool
374
299
-
Ala
TGC
[ENA]
¡û
>WENV180851834
ODKV01236461
[ODKV] human metagenome; G_DNA_Stool
204
129
-
Ala
TGC
[ENA]
¡û
>WENV180871486
ODLN01075856
[ODLN] human metagenome; G_DNA_Stool
92
167
+
Ala
TGC
[ENA]
¡û
>WENV180894422
ODMR01083097
[ODMR] human metagenome; G_DNA_Stool
353
278
-
Ala
TGC
[ENA]
¡û
>W141088285
AUUR01000090
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
3939
3864
-
Ala
TGC
[ENA]
¡û
>WENV180962443
ODUN01011691
[ODUN] human metagenome; G_DNA_Stool
245
320
+
Ala
TGC
[ENA]
¡û
>WENV181026721
ODXC01006878
[ODXC] human metagenome; G_DNA_Stool
345
420
+
Ala
TGC
[ENA]
¡û
>WENV181413870
OGCK01161089
[OGCK] hot springs metagenome; hot spring sediment
553
478
-
Ala
TGC
[ENA]
¡û
>WENV182398639
OIEN01004986
[OIEN] human gut metagenome; human gut
300
225
-
Ala
TGC
[ENA]
¡û
>W141246587
CANE01000062
Bacillota
Dehalobacter restrictus E1 [CANE]
444
369
-
Ala
TGC
[ENA]
¡û
>W141246620
CANF01000062
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
147
222
+
Ala
TGC
[ENA]
¡û
>WENV183380987
OLYJ01000014
[OLYJ] human gut metagenome; feces
13255
13330
+
Ala
TGC
[ENA]
¡û
>WENV183422091
OMBD01006546
[OMBD] human gut metagenome; feces
182
257
+
Ala
TGC
[ENA]
¡û
>WENV183444100
OMCO01000097
[OMCO] human gut metagenome; feces
23985
23910
-
Ala
TGC
[ENA]
¡û
>WENV183444843
OMCP01000014
[OMCP] human gut metagenome; feces
100324
100249
-
Ala
TGC
[ENA]
¡û
>WENV183470412
OMEK01000011
[OMEK] human gut metagenome; feces
14468
14543
+
Ala
TGC
[ENA]
¡û
>WENV183512185
OMKS01000104
[OMKS] sediment metagenome; hot spring sediment
59401
59326
-
Ala
TGC
[ENA]
¡û
>WENV183667750
ORJL010678112
[ORJL] groundwater metagenome; groundwater
483
555
+
Ala
TGC
[ENA]
¡û
>WENV170658873
JUEG02001273
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
509
584
+
Ala
TGC
[ENA]
¡û
>C09103967
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
173903
173978
+
Ala
TGC
[Ensembl]
¡û
>C09104015
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2822970
2823045
+
Ala
TGC
[Ensembl]
¡û
>C09104032
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
3389195
3389120
-
Ala
TGC
[Ensembl]
¡û
>C141011730
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
337196
337271
+
Ala
TGC
[Ensembl]
¡û
>W1911608722
PNXX01000019
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
211
136
-
Ala
TGC
[ENA]
¡û
>W1911613577
POSF01000022
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
1639
1714
+
Ala
TGC
[ENA]
¡û
>W1810805644
QRUA01000016
Bacillota
Ruminococcus bromii AF25-7LB [QRUA]
1836
1911
+
Ala
TGC
[ENA]
¡û
>W1810838117
QSTA01000002
Bacillota
Eubacterium sp. OM08-24 [QSTA]
375352
375277
-
Ala
TGC
[ENA]
¡û
>W1810867976
QTYV01000005
Bacillota
Ruminococcus sp. TF12-19AC [QTYV]
3903
3828
-
Ala
TGC
[ENA]
¡û
>C151016300
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
93817
93892
+
Ala
TGC
[Ensembl]
¡û
>SRA1033076
SRR035088.167572
454 Sequencing (SRP001809)
188
263
+
Ala
TGC
[SRA]
>W2010260925
CABJFL020000003
Bacillota
Ruminococcaceae bacterium [CABJFL]
257664
257589
-
Ala
TGC
[ENA]
¡û
>SRA1033463
SRR035088.264598
454 Sequencing (SRP001809)
189
264
+
Ala
TGC
[SRA]
>W2010288160
CABMMZ010000023
Bacillota
Ruminococcus bromii [CABMMZ]
76
1
-
Ala
TGC
[ENA]
¡û
>W2010288169
CABMMZ010000050
Bacillota
Ruminococcus bromii [CABMMZ]
3638
3563
-
Ala
TGC
[ENA]
¡û
>W2011206944
PNXX01000019
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
211
136
-
Ala
TGC
[ENA]
¡û
>W2011207114
POSF01000022
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
1639
1714
+
Ala
TGC
[ENA]
¡û
>W2011674168
SPQR01000025
Bacillota
Desulfosporosinus sp. Sb-LF [SPQR]
18426
18351
-
Ala
TGC
[ENA]
¡û
>W2012081063
VLKD01000001
Bacillota
Desulfitobacterium sp. LBE [VLKD]
5224666
5224741
+
Ala
TGC
[ENA]
¡û
>W2012081071
VLKD01000001
Bacillota
Desulfitobacterium sp. LBE [VLKD]
3343476
3343401
-
Ala
TGC
[ENA]
¡û
>W2110352062
JADNHD010000035
Bacillota
Ruminococcus sp. BSD2780120874_150323_B10 [JADNHD]
1790
1865
+
Ala
TGC
[ENA]
¡û
>W2110622253
JAHLQB010000060
Bacillota
Lachnoclostridium sp. MSJ-17 [JAHLQB]
324
399
+
Ala
TGC
[ENA]
¡û
>W2110736611
JAJDOO010000096
Bacillota
Desulfosporosinus sp. SRJS8 [JAJDOO]
182
107
-
Ala
TGC
[ENA]
¡û
>C231126142
CP072107
Bacillota
Oscillospiraceae bacterium CM [CP072107]
2166851
2166776
-
Ala
TGC
-
¡û
>C231136097
CP074197
Bacillota
Ruminococcus sp. FMBCY1 [CP074197]
1935025
1935100
+
Ala
TGC
-
¡û
>C231136105
CP074197
Bacillota
Ruminococcus sp. FMBCY1 [CP074197]
2344797
2344872
+
Ala
TGC
-
¡û
>C231136111
CP074197
Bacillota
Ruminococcus sp. FMBCY1 [CP074197]
1668441
1668366
-
Ala
TGC
-
¡û
>C231314378
CP092282
Bacillota
Dehalobacter sp. DCM [CP092282]
615110
615185
+
Ala
TGC
-
¡û
>C231651271
LR746496
Bacillota
Peptococcaceae bacterium INE [LR746496]
619311
619386
+
Ala
TGC
-
¡û
>C11120621
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
287796
287871
+
Ala
TGC
[Ensembl]
¡û
>C11120658
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2164582
2164507
-
Ala
TGC
[Ensembl]
¡û
>W1511533712
JYNH01000295
Bacillota
Desulfosporosinus sp. I2 [JYNH]
737
812
+
Ala
TGC
[ENA]
¡û
>W1511533714
JYNH01000296
Bacillota
Desulfosporosinus sp. I2 [JYNH]
266
341
+
Ala
TGC
[ENA]
¡û
>W1511644698
LDXJ01000003
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
216
141
-
Ala
TGC
[ENA]
¡û
>W1511645990
LDZY01000001
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
70777
70702
-
Ala
TGC
[ENA]
¡û
>W1511706589
LGUG01000009
Bacillota
Aneurinibacillus migulanus DSM 2895 [LGUG]
204106
204031
-
Ala
TGC
[ENA]
¡û
>W11177266
AGAF01000180
Bacillota
Desulfosporosinus sp. OT [AGAF]
162
237
+
Ala
TGC
[ENA]
¡û
>W11177279
AGAF01000200
Bacillota
Desulfosporosinus sp. OT [AGAF]
115
40
-
Ala
TGC
[ENA]
¡û
>W11181384
AGJA01000020
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
352
427
+
Ala
TGC
[ENA]
¡û
>W11181440
AGJB01000035
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
308
383
+
Ala
TGC
[ENA]
¡û
>C121005955
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
2011315
2011390
+
Ala
TGC
[Ensembl]
¡û
>C121011407
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
136527
136602
+
Ala
TGC
[Ensembl]
¡û
>C121011416
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
248789
248864
+
Ala
TGC
[Ensembl]
¡û
>C121011456
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2120106
2120181
+
Ala
TGC
[Ensembl]
¡û
>C121011474
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2636226
2636151
-
Ala
TGC
[Ensembl]
¡û
>C121014765
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
93472
93547
+
Ala
TGC
[Ensembl]
¡û
>C121014801
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
1833828
1833903
+
Ala
TGC
[Ensembl]
¡û
>C121014841
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
93843
93918
+
Ala
TGC
[Ensembl]
¡û
>C121014857
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
107422
107497
+
Ala
TGC
[Ensembl]
¡û
>W121010391
AGJE01000049
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
424
499
+
Ala
TGC
[ENA]
¡û
>W121010393
AGJE01000051
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
706
781
+
Ala
TGC
[ENA]
¡û
>W121010395
AGJE01000054
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
356
281
-
Ala
TGC
[ENA]
¡û
>W121010501
AGJG01000067
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
205
280
+
Ala
TGC
[ENA]
¡û
>W121010503
AGJG01000068
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
289
214
-
Ala
TGC
[ENA]
¡û
>W121010543
AGJH01000054
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
259
334
+
Ala
TGC
[ENA]
¡û
>W121010560
AGJH01000063
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
201
126
-
Ala
TGC
[ENA]
¡û
>W121036114
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
109782
109857
+
Ala
TGC
[ENA]
¡û
>W121036144
AHLV01000002
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
545631
545706
+
Ala
TGC
[ENA]
¡û
>W121036149
AHLV01000002
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
1927503
1927428
-
Ala
TGC
[ENA]
¡û
>C131003216
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
98654
98729
+
Ala
TGC
[Ensembl]
¡û
>C131003264
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1814743
1814818
+
Ala
TGC
[Ensembl]
¡û
>C131003282
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
2245311
2245236
-
Ala
TGC
[Ensembl]
¡û
>C131008554
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
1959714
1959639
-
Ala
TGC
[Ensembl]
¡û
>C131008605
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
1989495
1989420
-
Ala
TGC
[Ensembl]
¡û
>W1610781436
LOCK01000073
Bacillota
Desulfitobacterium hafniense [LOCK]
223
148
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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