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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.311686 (35 seq.)
>W1711743923
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
2516832
2516757
-
Lys
TTT
[ENA]
¡û
>W1712080672
NHMK01000020
Deinococcota
Deinococcus indicus [NHMK]
239007
239082
+
Lys
TTT
[ENA]
¡û
>WENV181411573
OGCI01032227
[OGCI] hot springs metagenome; Hot spring water
327
252
-
Lys
TTT
[ENA]
¡û
>WENV170238672
CEQM01213671
[CEQM] marine metagenome genome assembly TARA_078_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
53
128
+
Lys
CTT
[ENA]
¡û
>WENV170246910
CEQQ01004261
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2701
2626
-
Lys
CTT
[ENA]
¡û
>C181134291
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
766869
766944
+
Lys
TTT
-
¡û
>C181185086
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
2039394
2039469
+
Lys
TTT
-
¡û
>W141711932
JMQF01000014
Deinococcota
Deinococcus sp. RL [JMQF]
10306
10231
-
Lys
TTT
[ENA]
¡û
>W1911597482
PNOR01000011
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
23471
23396
-
Lys
TTT
[ENA]
¡û
>W1911788253
QYCQ01000002
Deinococcota
Deinococcus sp. RM [QYCQ]
5568
5493
-
Lys
TTT
[ENA]
¡û
>C151081877
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
452158
452233
+
Lys
TTT
[Ensembl]
¡û
>W2010133710
BLBE01000001
Deinococcota
Deinococcus sp. KR-1 [BLBE]
17326
17251
-
Lys
TTT
[ENA]
¡û
>W2010699907
JACHFL010000003
Deinococcota
Deinococcus humi DSM 27939 [JACHFL]
409987
410062
+
Lys
TTT
[ENA]
¡û
>W2010699991
JACHFN010000002
Deinococcota
Deinococcus budaensis DSM 101791 [JACHFN]
312785
312710
-
Lys
TTT
[ENA]
¡û
>W2011206381
PNOR01000011
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
23471
23396
-
Lys
TTT
[ENA]
¡û
>W2011340468
QYCQ01000002
Deinococcota
Deinococcus sp. RM [QYCQ]
5568
5493
-
Lys
TTT
[ENA]
¡û
>W2011577074
SGWE01000004
Deinococcota
Deinococcus sp. JMULE3 [SGWE]
3022602
3022527
-
Lys
TTT
[ENA]
¡û
>W2012457503
WVHK01000092
Deinococcota
Deinococcus xianganensis Y35 [WVHK]
9769
9844
+
Lys
TTT
[ENA]
¡û
>W2110025154
BMHJ01000021
Deinococcota
Deinococcus saudiensis CGMCC 1.15089 [BMHJ]
30001
29926
-
Lys
TTT
[ENA]
¡û
>W2110034143
BMOL01000003
Deinococcota
Deinococcus aerolatus JCM 15442 [BMOL]
25284
25359
+
Lys
TTT
[ENA]
¡û
>W2110034207
BMOM01000021
Deinococcota
Deinococcus aerophilus JCM 15443 [BMOM]
34044
33969
-
Lys
TTT
[ENA]
¡û
>W2110034325
BMOR01000001
Deinococcota
Deinococcus daejeonensis JCM 16918 [BMOR]
27241
27166
-
Lys
TTT
[ENA]
¡û
>W2110034580
BMOW01000007
Deinococcota
Deinococcus humi JCM 17915 [BMOW]
91670
91595
-
Lys
TTT
[ENA]
¡û
>W2110034916
BMPE01000001
Deinococcota
Deinococcus radiotolerans JCM 19173 [BMPE]
715382
715457
+
Lys
TTT
[ENA]
¡û
>W2110035484
BMPP01000004
Deinococcota
Deinococcus malanensis JCM 30331 [BMPP]
285803
285878
+
Lys
TTT
[ENA]
¡û
>W2110036468
BMQG01000001
Deinococcota
Deinococcus arenae JCM 31047 [BMQG]
418960
418885
-
Lys
TTT
[ENA]
¡û
>W2110051781
BNAM01000017
Deinococcota
Deinococcus indicus CGMCC 1.18440 [BNAM]
82142
82217
+
Lys
TTT
[ENA]
¡û
>ENV09003760
ADGO01168959
Compost metagenome contig00001
203
128
-
Lys
CTT
[ENA]
¡û
>W2110580074
JAGXJO010000003
Deinococcota
Deinococcus sp. GbtcB9 [JAGXJO]
263752
263677
-
Lys
TTT
[ENA]
¡û
>W2110680297
JAIHBB010000139
Deinococcota
Deinococcus sp. RIT780 [JAIHBB]
539
464
-
Lys
TTT
[ENA]
¡û
>C231180829
CP083455
Deinococcota
Deinococcus sp. TS-293 [CP083455]
946136
946061
-
Lys
TTT
-
¡û
>C241003954
AP021849
Deinococcota
Deinococcus grandis ATCC 43672 [AP021849]
1852636
1852711
+
Lys
TTT
-
¡û
>C11107149
CP002454
Deinococcota
Deinococcus maricopensis DSM 21211 [CP002454]
1281876
1281801
-
Lys
TTT
[Ensembl]
¡û
>W1610061599
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
1461532
1461457
-
Lys
TTT
[ENA]
¡û
>W1710059264
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
1461532
1461457
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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