This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31173 (98 seq.)
>W1711187718
LWPS01000033
Bacillota
Clostridium sp. HMSC19A10 [LWPS]
4315
4405
+
Ser
TGA
[ENA]
¡û
>W1711187719
LWPS01000034
Bacillota
Clostridium sp. HMSC19A10 [LWPS]
366
456
+
Ser
TGA
[ENA]
¡û
>W131001787
AGYK01000026
Bacillota
Clostridium butyricum 60E.3 [AGYK]
123793
123703
-
Ser
TGA
[ENA]
¡û
>W131001789
AGYK01000026
Bacillota
Clostridium butyricum 60E.3 [AGYK]
123231
123141
-
Ser
TGA
[ENA]
¡û
>W131110808
APKZ01000048
Bacillota
Clostridium butyricum DKU-01 [APKZ]
67947
67857
-
Ser
TGA
[ENA]
¡û
>W131110810
APKZ01000048
Bacillota
Clostridium butyricum DKU-01 [APKZ]
67384
67294
-
Ser
TGA
[ENA]
¡û
>W131232784
AUJN01000014
Bacillota
Clostridium butyricum AGR2140 [AUJN]
142232
142142
-
Ser
TGA
[ENA]
¡û
>W131232786
AUJN01000014
Bacillota
Clostridium butyricum AGR2140 [AUJN]
141793
141703
-
Ser
TGA
[ENA]
¡û
>C171021771
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
392246
392156
-
Ser
TGA
-
¡û
>C171021773
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
391806
391716
-
Ser
TGA
-
¡û
>C171047516
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
19029
19119
+
Ser
TGA
-
¡û
>C171047518
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
19592
19682
+
Ser
TGA
-
¡û
>WENV180278798
OBHX01008333
[OBHX] metagenome; feces
4728
4818
+
Ser
TGA
[ENA]
¢þ
>WENV180278800
OBHX01008333
[OBHX] metagenome; feces
5291
5381
+
Ser
TGA
[ENA]
¢þ
>WENV180333806
OBLF01002178
[OBLF] metagenome; feces
13443
13353
-
Ser
TGA
[ENA]
¢þ
>WENV180334273
OBLF01007629
[OBLF] metagenome; feces
93
3
-
Ser
TGA
[ENA]
¢þ
>WENV180348549
OBLO01007571
[OBLO] metagenome; feces
4728
4638
-
Ser
TGA
[ENA]
¢þ
>WENV180348551
OBLO01007571
[OBLO] metagenome; feces
4165
4075
-
Ser
TGA
[ENA]
¢þ
>WENV180413610
OBVB01021391
[OBVB] human gut metagenome; faeces
290
380
+
Ser
TGA
[ENA]
¢þ
>WENV181555209
OGIT01000157
[OGIT] metagenome; Human gut stool
262
352
+
Ser
TGA
[ENA]
¢þ
>W08001315
ABDT01000052
Bacillota
Clostridium butyricum 5521 [ABDT]
9248
9338
+
Ser
TGA
[ENA]
¡û
>W08001317
ABDT01000052
Bacillota
Clostridium butyricum 5521 [ABDT]
9811
9901
+
Ser
TGA
[ENA]
¡û
>WENV181798320
OGRV01000024
[OGRV] human gut metagenome; fecal sample 3 from infant 4
121811
121721
-
Ser
TGA
[ENA]
¢þ
>WENV181798322
OGRV01000024
[OGRV] human gut metagenome; fecal sample 3 from infant 4
121248
121158
-
Ser
TGA
[ENA]
¢þ
>WENV181798837
OGRX01000469
[OGRX] human gut metagenome; fecal sample 2 from infant 8
10087
9997
-
Ser
TGA
[ENA]
¢þ
>WENV181798839
OGRX01000469
[OGRX] human gut metagenome; fecal sample 2 from infant 8
9524
9434
-
Ser
TGA
[ENA]
¢þ
>WENV181801422
OGSB01000267
[OGSB] human gut metagenome; fecal sample 5 from infant 3
28882
28792
-
Ser
TGA
[ENA]
¢þ
>WENV181801557
OGSB01000874
[OGSB] human gut metagenome; fecal sample 5 from infant 3
187
97
-
Ser
TGA
[ENA]
¢þ
>WENV181802042
OGSC01001602
[OGSC] human gut metagenome; fecal sample 8 from infant 5
187
97
-
Ser
TGA
[ENA]
¢þ
>WENV181802177
OGSC01009161
[OGSC] human gut metagenome; fecal sample 8 from infant 5
93
3
-
Ser
TGA
[ENA]
¢þ
>WENV181805152
OGSH01000996
[OGSH] human gut metagenome; fecal sample 5 from infant 6
735
645
-
Ser
TGA
[ENA]
¢þ
>WENV181805154
OGSH01000996
[OGSH] human gut metagenome; fecal sample 5 from infant 6
172
82
-
Ser
TGA
[ENA]
¢þ
>WENV181805733
OGSJ01000358
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
29494
29404
-
Ser
TGA
[ENA]
¢þ
>WENV181805735
OGSJ01000358
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
28931
28841
-
Ser
TGA
[ENA]
¢þ
>WENV181807125
OGSN01002919
[OGSN] human gut metagenome; fecal sample 7 from infant 8
375
285
-
Ser
TGA
[ENA]
¢þ
>WENV181807854
OGSQ01000425
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
16484
16394
-
Ser
TGA
[ENA]
¢þ
>WENV181809382
OGST01000062
[OGST] human gut metagenome; fecal sample 7 from infant 6
101242
101152
-
Ser
TGA
[ENA]
¢þ
>WENV181809671
OGST01001417
[OGST] human gut metagenome; fecal sample 7 from infant 6
93
3
-
Ser
TGA
[ENA]
¢þ
>WENV181810565
OGSV01000243
[OGSV] human gut metagenome; fecal sample 4 from infant 3
29452
29362
-
Ser
TGA
[ENA]
¢þ
>WENV181810567
OGSV01000243
[OGSV] human gut metagenome; fecal sample 4 from infant 3
28889
28799
-
Ser
TGA
[ENA]
¢þ
>WENV181811002
OGSX01000636
[OGSX] human gut metagenome; fecal sample 1 from infant 8
2034
1944
-
Ser
TGA
[ENA]
¢þ
>WENV181811337
OGSY01000744
[OGSY] human gut metagenome; fecal sample 5 from infant 8
11966
11876
-
Ser
TGA
[ENA]
¢þ
>WENV181811409
OGSY01001648
[OGSY] human gut metagenome; fecal sample 5 from infant 8
187
97
-
Ser
TGA
[ENA]
¢þ
>WENV181811652
OGSZ01000218
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
28941
28851
-
Ser
TGA
[ENA]
¢þ
>WENV181811763
OGSZ01001393
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
93
3
-
Ser
TGA
[ENA]
¢þ
>WENV181813725
OGTD01000319
[OGTD] human gut metagenome; fecal sample 1 from infant 3
12118
12028
-
Ser
TGA
[ENA]
¢þ
>WENV181813857
OGTD01004752
[OGTD] human gut metagenome; fecal sample 1 from infant 3
93
3
-
Ser
TGA
[ENA]
¢þ
>WENV181814067
OGTE01003690
[OGTE] human gut metagenome; fecal sample 2 from infant 3
533
443
-
Ser
TGA
[ENA]
¢þ
>WENV181814355
OGTG01000043
[OGTG] human gut metagenome; fecal sample 1 from infant 4
122083
121993
-
Ser
TGA
[ENA]
¢þ
>WENV181814357
OGTG01000043
[OGTG] human gut metagenome; fecal sample 1 from infant 4
121520
121430
-
Ser
TGA
[ENA]
¢þ
>WENV181815050
OGTI01000202
[OGTI] human gut metagenome; fecal sample 5 from infant 1
13115
13025
-
Ser
TGA
[ENA]
¢þ
>WENV181815111
OGTI01001802
[OGTI] human gut metagenome; fecal sample 5 from infant 1
169
79
-
Ser
TGA
[ENA]
¢þ
>WENV181817599
OGTN01001298
[OGTN] human gut metagenome; fecal sample 5 from infant 4
187
97
-
Ser
TGA
[ENA]
¢þ
>WENV181817716
OGTN01006144
[OGTN] human gut metagenome; fecal sample 5 from infant 4
172
82
-
Ser
TGA
[ENA]
¢þ
>WENV181818201
OGTS01000025
[OGTS] human gut metagenome; fecal sample 4 from infant 4
122083
121993
-
Ser
TGA
[ENA]
¢þ
>WENV181818203
OGTS01000025
[OGTS] human gut metagenome; fecal sample 4 from infant 4
121520
121430
-
Ser
TGA
[ENA]
¢þ
>WENV181818608
OGTT01000398
[OGTT] human gut metagenome; fecal sample 6 from infant 8
10853
10763
-
Ser
TGA
[ENA]
¢þ
>WENV181818610
OGTT01000398
[OGTT] human gut metagenome; fecal sample 6 from infant 8
10290
10200
-
Ser
TGA
[ENA]
¢þ
>WENV181818891
OGTU01000110
[OGTU] human gut metagenome; fecal sample 6 from infant 4
29499
29409
-
Ser
TGA
[ENA]
¢þ
>WENV181818893
OGTU01000110
[OGTU] human gut metagenome; fecal sample 6 from infant 4
28936
28846
-
Ser
TGA
[ENA]
¢þ
>WENV181822995
OGUH01002250
[OGUH] human gut metagenome; fecal sample 3 from infant 3
424
334
-
Ser
TGA
[ENA]
¢þ
>W141206251
AZLX01000081
Bacillota
Clostridium butyricum DORA_1 [AZLX]
2
92
+
Ser
TGA
[ENA]
¡û
>W141259034
CBYK010000025
Bacillota
Clostridium butyricum [CBYK]
6032
6122
+
Ser
TGA
[ENA]
¡û
>W141259036
CBYK010000025
Bacillota
Clostridium butyricum [CBYK]
6595
6685
+
Ser
TGA
[ENA]
¡û
>WENV182827054
OKCW01008123
[OKCW] human gut metagenome; human gut
94
184
+
Ser
TGA
[ENA]
¢þ
>WENV182944882
OKVJ01002721
[OKVJ] human gut metagenome; human gut
4942
4852
-
Ser
TGA
[ENA]
¢þ
>WENV182952964
OKVX01000938
[OKVX] human gut metagenome; human gut
8867
8777
-
Ser
TGA
[ENA]
¢þ
>WENV183067237
OLIL01020597
[OLIL] metagenome; faeces
61
151
+
Ser
TGA
[ENA]
¢þ
>WENV170016646
AZMM01018927
[AZMM] human gut metagenome; premature infant gut
174
84
-
Ser
TGA
[ENA]
¢þ
>C191171137
CP039702
Bacillota
Clostridium butyricum [CP039702]
77887
77977
+
Ser
TGA
-
¡û
>C191171138
CP039702
Bacillota
Clostridium butyricum [CP039702]
78449
78539
+
Ser
TGA
-
¡û
>C191171260
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
1830654
1830744
+
Ser
TGA
-
¡û
>C191171262
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
1831217
1831307
+
Ser
TGA
-
¡û
>W09132873
ACOM01000009
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
11269
11359
+
Ser
TGA
[ENA]
¡û
>W09132875
ACOM01000009
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
11832
11922
+
Ser
TGA
[ENA]
¡û
>W1910637988
LRDH01000140
Bacillota
Clostridium butyricum 300064 [LRDH]
266
356
+
Ser
TGA
[ENA]
¡û
>W1810250554
PQCS01000118
Bacillota
Clostridium sp. 3-3 [PQCS]
4651
4741
+
Ser
TGA
[ENA]
¡û
>W1810250556
PQCS01000118
Bacillota
Clostridium sp. 3-3 [PQCS]
5214
5304
+
Ser
TGA
[ENA]
¡û
>W1810805964
QRUG01000032
Bacillota
Clostridium butyricum AF25-25 [QRUG]
4707
4797
+
Ser
TGA
[ENA]
¡û
>W1810805966
QRUG01000032
Bacillota
Clostridium butyricum AF25-25 [QRUG]
5270
5360
+
Ser
TGA
[ENA]
¡û
>W1511350207
JRMA01000004
Bacillota
Clostridium butyricum INCQS635 [JRMA]
5377
5467
+
Ser
TGA
[ENA]
¡û
>W1511365587
JSEG01000011
Bacillota
Clostridium butyricum NOR 33234 [JSEG]
5068
5158
+
Ser
TGA
[ENA]
¡û
>W1511501370
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3760003
3759913
-
Ser
TGA
[ENA]
¡û
>W1511501372
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3759440
3759350
-
Ser
TGA
[ENA]
¡û
>W1511554767
JZWE01000086
Bacillota
Clostridium sp. IBUN22A [JZWE]
4360
4450
+
Ser
TGA
[ENA]
¡û
>W1511554845
JZWF01000057
Bacillota
Clostridium sp. IBUN125C [JZWF]
122138
122048
-
Ser
TGA
[ENA]
¡û
>W1511554847
JZWF01000057
Bacillota
Clostridium sp. IBUN125C [JZWF]
121575
121485
-
Ser
TGA
[ENA]
¡û
>W1511554886
JZWG01000077
Bacillota
Clostridium sp. IBUN13A [JZWG]
3675
3585
-
Ser
TGA
[ENA]
¡û
>W1511554948
JZWH01000039
Bacillota
Clostridium sp. IBUN62F [JZWH]
4859
4949
+
Ser
TGA
[ENA]
¡û
>C161054101
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
331182
331272
+
Ser
TGA
-
¡û
>C161054103
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
331745
331835
+
Ser
TGA
-
¡û
>C161055854
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
18861
18951
+
Ser
TGA
-
¡û
>C161055856
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
19424
19514
+
Ser
TGA
-
¡û
>C161076386
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
4547
4637
+
Ser
TGA
-
¡û
>W1610627656
LIDW01000019
Bacillota
Clostridium butyricum [LIDW]
80130
80040
-
Ser
TGA
[ENA]
¡û
>W1610627658
LIDW01000019
Bacillota
Clostridium butyricum [LIDW]
79571
79481
-
Ser
TGA
[ENA]
¡û
>W1710758783
LIDW01000019
Bacillota
Clostridium butyricum [LIDW]
80130
80040
-
Ser
TGA
[ENA]
¡û
>W1710758785
LIDW01000019
Bacillota
Clostridium butyricum [LIDW]
79571
79481
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK