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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.311787 (128 seq.)
>W1710872056
LMLR01000015
Actinomycetota
Arthrobacter sp. Leaf69 [LMLR]
83299
83373
+
Leu
TAA
[ENA]
¡û
>W1710875613
LMON01000012
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
222071
222147
+
Leu
TAA
[ENA]
¡û
>W1710916197
LNUV01000003
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
143837
143913
+
Leu
TAA
[ENA]
¡û
>W1711124371
LUKB01000002
Actinomycetota
Arthrobacter sp. D2 [LUKB]
190852
190776
-
Leu
TAA
[ENA]
¡û
>W1711124432
LUKC01000023
Actinomycetota
Arthrobacter sp. D4 [LUKC]
27985
28061
+
Leu
TAA
[ENA]
¡û
>W1711724064
MTPV01000020
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
23025
22951
-
Leu
TAA
[ENA]
¡û
>C171040593
CP015732
Actinomycetota
Arthrobacter sp. U41 [CP015732]
2415505
2415579
+
Leu
TAA
-
¡û
>C171062255
CP017421
Actinomycetota
Arthrobacter sp. ZXY-2 [CP017421]
2858278
2858202
-
Leu
TAA
-
¡û
>W131172209
ARGT01000021
Actinomycetota
Arthrobacter sp. 131MFCol6.1 [ARGT]
134670
134596
-
Leu
TAA
[ENA]
¡û
>W131172281
ARGU01000043
Actinomycetota
Arthrobacter sp. 161MFSha2.1 [ARGU]
228298
228372
+
Leu
TAA
[ENA]
¡û
>W131237713
AUPJ01000196
Actinomycetota
Arthrobacter sp. TB 26 [AUPJ]
1655
1581
-
Leu
TAA
[ENA]
¡û
>C000052
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
1355200
1355276
+
Leu
TAA
[Ensembl]
¡û
>WENV180018459
FSZH01000459
[FSZH] metagenome; soil
2999
2925
-
Leu
TAA
[ENA]
¡û
>WENV180019642
FTCF01000169
[FTCF] metagenome; soil
7087
7013
-
Leu
TAA
[ENA]
¡û
>WENV180027143
FTIW01344041
[FTIW] metagenome; soil
49
123
+
Leu
TAA
[ENA]
¡û
>WENV180029901
FTJL01016838
[FTJL] metagenome; soil
51
125
+
Leu
TAA
[ENA]
¡û
>WENV180039635
LLBY010108947
[LLBY] soil metagenome; soil from tomato rhizosphere
323
247
-
Leu
TAA
[ENA]
¡û
>W141065994
AQRI01000013
Actinomycetota
Arthrobacter sp. MA-N2 [AQRI]
506742
506816
+
Leu
TAA
[ENA]
¡û
>W141106065
AVPD01000004
Actinomycetota
Arthrobacter sp. AK-YN10 [AVPD]
208614
208538
-
Leu
TAA
[ENA]
¡û
>W141213504
AZSB01000096
Actinomycetota
Arthrobacter sp. I3 [AZSB]
1057
1131
+
Leu
TAA
[ENA]
¡û
>W141216723
AZVC01000004
Actinomycetota
Paenarthrobacter nicotinovorans 231Sha2.1M6 [AZVC]
125652
125578
-
Leu
TAA
[ENA]
¡û
>W141217154
AZVJ01000010
Actinomycetota
Paenarthrobacter nicotinovorans 26Cvi1.1E [AZVJ]
19520
19446
-
Leu
TAA
[ENA]
¡û
>W141278862
JAFW01000001
Actinomycetota
Arthrobacter sp. 31Y [JAFW]
3808845
3808919
+
Leu
TAA
[ENA]
¡û
>C181064957
CP022436
Actinomycetota
Arthrobacter sp. YN [CP022436]
1460085
1460159
+
Leu
TAA
-
¡û
>C191164636
CP039290
Actinomycetota
Arthrobacter sp. PAMC25564 [CP039290]
3788275
3788201
-
Leu
TAA
-
¡û
>W141565201
JIBJ01000006
Actinomycetota
Arthrobacter sp. 9MFCol3.1 [JIBJ]
203910
203836
-
Leu
TAA
[ENA]
¡û
>W1910181578
BJMD01000008
Actinomycetota
Paenarthrobacter aurescens NBRC 12136 [BJMD]
72640
72566
-
Leu
TAA
[ENA]
¡û
>W1911566821
PCPC01000036
Actinomycetota
Arthrobacter sp. MYb51 [PCPC]
16321
16247
-
Leu
TAA
[ENA]
¡û
>W1911567593
PCPR01000037
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
16321
16247
-
Leu
TAA
[ENA]
¡û
>W1810424168
PYUI01000004
Actinomycetota
Arthrobacter sp. H-02-3 LBUM149 [PYUI]
99203
99277
+
Leu
TAA
[ENA]
¡û
>W1810676803
QKMG01000003
Actinomycetota
Paenarthrobacter nicotinovorans 25_8 [QKMG]
96687
96761
+
Leu
TAA
[ENA]
¡û
>W2010095227
BJMD01000008
Actinomycetota
Paenarthrobacter aurescens NBRC 12136 [BJMD]
72640
72566
-
Leu
TAA
[ENA]
¡û
>W2010309529
CABWLJ010000099
Actinomycetota
Arthrobacter sp. 9V [CABWLJ]
60171
60097
-
Leu
TAA
[ENA]
¡û
>W2010320602
CACSJJ010000001
Actinomycetota
Arthrobacter sp. 18067 [CACSJJ]
159073
158999
-
Leu
TAA
[ENA]
¡û
>W2010445624
JAABNS010000001
Actinomycetota
Pseudarthrobacter sp. ATCC 49987 [JAABNS]
2670160
2670086
-
Leu
TAA
[ENA]
¡û
>W2010459585
JAAGBD010000005
Actinomycetota
Arthrobacter sp. AAC22 [JAAGBD]
68489
68563
+
Leu
TAA
[ENA]
¡û
>W2010533700
JAAOXO010000003
Actinomycetota
Paenarthrobacter sp. MSM-2-10-13 [JAAOXO]
142951
142877
-
Leu
TAA
[ENA]
¡û
>W2010534604
JAAOZD010000002
Actinomycetota
Paenarthrobacter ilicis CECT 4207 [JAAOZD]
356918
356992
+
Leu
TAA
[ENA]
¡û
>W2010598975
JABFMX010000019
Actinomycetota
Arthrobacter sp. C9C5 [JABFMX]
85969
86043
+
Leu
TAA
[ENA]
¡û
>W2010607990
JABMCX010000053
Actinomycetota
Paenarthrobacter sp. CM16 [JABMCX]
5872
5798
-
Leu
TAA
[ENA]
¡û
>W2010788880
LVCB01000043
Actinomycetota
Arthrobacter sp. M5 [LVCB]
27985
28059
+
Leu
TAA
[ENA]
¡û
>W2010788951
LVCC01000098
Actinomycetota
Arthrobacter sp. M6 [LVCC]
27985
28059
+
Leu
TAA
[ENA]
¡û
>W2011179105
PCPC01000036
Actinomycetota
Arthrobacter sp. MYb51 [PCPC]
16321
16247
-
Leu
TAA
[ENA]
¡û
>W2011179809
PCPR01000037
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
16321
16247
-
Leu
TAA
[ENA]
¡û
>W2011260470
QJQZ01000057
Actinomycetota
Paenarthrobacter nitroguajacolicus xwA8 [QJQZ]
142832
142906
+
Leu
TAA
[ENA]
¡û
>W2011260566
QJRB01000052
Actinomycetota
Paenarthrobacter nitroguajacolicus xwA3 [QJRB]
404500
404426
-
Leu
TAA
[ENA]
¡û
>W2011369044
RBED01000070
Actinomycetota
Arthrobacter oryzae TNB02 [RBED]
87838
87912
+
Leu
TAA
[ENA]
¡û
>W2011373981
RBIR01000004
Actinomycetota
Arthrobacter oryzae DSM 25586 [RBIR]
101902
101976
+
Leu
TAA
[ENA]
¡û
>W2011530381
SBHM01000007
Actinomycetota
Paenarthrobacter ureafaciens DSM 20126 [SBHM]
2549630
2549704
+
Leu
TAA
[ENA]
¡û
>W2011553591
SDXQ01000048
Actinomycetota
Arthrobacter sp. TS-15 [SDXQ]
63485
63411
-
Leu
TAA
[ENA]
¡û
>W2110035321
BMPM01000002
Actinomycetota
Paenarthrobacter histidinolovorans JCM 2520 [BMPM]
410314
410240
-
Leu
TAA
[ENA]
¡û
>W2110038689
BMRR01000003
Actinomycetota
Paenarthrobacter nicotinovorans JCM 3874 [BMRR]
420191
420117
-
Leu
TAA
[ENA]
¡û
>W2110070445
BPFW01000002
Actinomycetota
Arthrobacter sp. NicSoilC12 [BPFW]
326573
326499
-
Leu
TAA
[ENA]
¡û
>W2110326792
JADIXW010000030
Actinomycetota
Paenarthrobacter sp. GOM3 [JADIXW]
322297
322371
+
Leu
TAA
[ENA]
¡û
>W2110458567
JAFBCD010000001
Actinomycetota
Paenarthrobacter ilicis DSM 20138 [JAFBCD]
1177636
1177710
+
Leu
TAA
[ENA]
¡û
>W2110543574
JAGGPR010000002
Actinomycetota
Arthrobacter sp. ISL-95 [JAGGPR]
145373
145447
+
Leu
TAA
[ENA]
¡û
>W2110552627
JAGINL010000001
Actinomycetota
Pseudarthrobacter sp. PvP004 [JAGINL]
2658695
2658621
-
Leu
TAA
[ENA]
¡û
>W2110553462
JAGINZ010000001
Actinomycetota
Paenarthrobacter nicotinovorans DSM 420 [JAGINZ]
717315
717241
-
Leu
TAA
[ENA]
¡û
>W2110555923
JAGIXT010000006
Actinomycetota
Paenarthrobacter ureafaciens MPD2 [JAGIXT]
68621
68695
+
Leu
TAA
[ENA]
¡û
>W2110563121
JAGPOT010000009
Actinomycetota
Pseudarthrobacter sp. NJ-Z5 [JAGPOT]
48428
48502
+
Leu
TAA
[ENA]
¡û
>W2110635483
JAHOPC010000005
Actinomycetota
Paenarthrobacter sp. MMS21-TAE1-1 [JAHOPC]
183120
183194
+
Leu
TAA
[ENA]
¡û
>C201084677
CP040174
Actinomycetota
Arthrobacter sp. UKPF54-2 [CP040174]
259215
259141
-
Leu
TAA
-
¡û
>C211024572
AP024630
Actinomycetota
Arthrobacter sp. NtRootA1 [AP024630]
1294517
1294591
+
Leu
TAA
-
¡û
>C211024623
AP024631
Actinomycetota
Arthrobacter sp. NtRootA2 [AP024631]
1271875
1271949
+
Leu
TAA
-
¡û
>C211024671
AP024634
Actinomycetota
Arthrobacter sp. NtRootA4 [AP024634]
1040731
1040805
+
Leu
TAA
-
¡û
>C211024775
AP024637
Actinomycetota
Arthrobacter sp. NtRootC7 [AP024637]
1271873
1271947
+
Leu
TAA
-
¡û
>C211024827
AP024639
Actinomycetota
Arthrobacter sp. NtRootC45 [AP024639]
1271873
1271947
+
Leu
TAA
-
¡û
>C211024879
AP024641
Actinomycetota
Arthrobacter sp. NtRootD5 [AP024641]
1271873
1271947
+
Leu
TAA
-
¡û
>C211024931
AP024643
Actinomycetota
Arthrobacter sp. StoSoilA2 [AP024643]
1402345
1402419
+
Leu
TAA
-
¡û
>C211024983
AP024644
Actinomycetota
Arthrobacter sp. StoSoilB3 [AP024644]
1293502
1293576
+
Leu
TAA
-
¡û
>C211025035
AP024646
Actinomycetota
Arthrobacter sp. StoSoilB5 [AP024646]
1377667
1377741
+
Leu
TAA
-
¡û
>C211025169
AP024651
Actinomycetota
Arthrobacter sp. StoSoilB20 [AP024651]
1433315
1433389
+
Leu
TAA
-
¡û
>C211025221
AP024652
Actinomycetota
Arthrobacter sp. StoSoilB22 [AP024652]
1287139
1287213
+
Leu
TAA
-
¡û
>C211025275
AP024653
Actinomycetota
Arthrobacter sp. NicSoilB4 [AP024653]
1045007
1045081
+
Leu
TAA
-
¡û
>C211025324
AP024655
Actinomycetota
Arthrobacter sp. NicSoilB8 [AP024655]
1293885
1293959
+
Leu
TAA
-
¡û
>C211025470
AP024661
Actinomycetota
Arthrobacter sp. NicSoilE8 [AP024661]
1198032
1198106
+
Leu
TAA
-
¡û
>C211030247
CP014571
Actinomycetota
Arthrobacter sp. D5-1 [CP014571]
1493302
1493376
+
Leu
TAA
-
¡û
>C211030318
CP014574
Actinomycetota
Paenarthrobacter ureafaciens DnL1-1 [CP014574]
4061055
4060981
-
Leu
TAA
-
¡û
>C211093933
CP053544
Actinomycetota
Paenarthrobacter sp. YJN-5 [CP053544]
3277685
3277611
-
Leu
TAA
-
¡û
>C211093963
CP053549
Actinomycetota
Paenarthrobacter sp. YJN-D [CP053549]
2157525
2157599
+
Leu
TAA
-
¡û
>C211159632
CP062235
Actinomycetota
Arthrobacter sp. TES [CP062235]
540619
540545
-
Leu
TAA
-
¡û
>C211239660
CP068013
Actinomycetota
Paenarthrobacter ureafaciens CZY1 [CP068013]
1394380
1394454
+
Leu
TAA
-
¡û
>W2110708351
JAIWYX010000006
Actinomycetota
Arthrobacter sp. M4 [JAIWYX]
59547
59621
+
Leu
TAA
[ENA]
¡û
>C211377303
CP080382
Actinomycetota
Arthrobacter sp. PAMC25284 [CP080382]
1520129
1520055
-
Leu
TAA
-
¡û
>W1510018502
BBUD01000283
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
7517
7443
-
Leu
TAA
[ENA]
¡û
>W1510018533
BBUE01000037
Actinomycetota
Arthrobacter sp. Hiyo6 [BBUE]
1069
1143
+
Leu
TAA
[ENA]
¡û
>C231193758
CP084560
Actinomycetota
Arthrobacter sp. FW306-2-2C-D06B [CP084560]
1278118
1278192
+
Leu
TAA
-
¡û
>C231193859
CP084564
Actinomycetota
Arthrobacter sp. FW305-123 [CP084564]
1279798
1279872
+
Leu
TAA
-
¡û
>C231259754
CP089293
Actinomycetota
Paenarthrobacter nicotinovorans ATCC 49919 [CP089293]
1252304
1252378
+
Leu
TAA
-
¡û
>C231262658
CP089515
Actinomycetota
Paenarthrobacter nicotinovorans nic- [CP089515]
1250240
1250314
+
Leu
TAA
-
¡û
>W2110750856
MQTO01000097
Actinomycetota
Arthrobacter sp. ES1 [MQTO]
11773
11699
-
Leu
TAA
[ENA]
¡û
>W2110750872
MQTQ01000006
Actinomycetota
Arthrobacter sp. SO5 [MQTQ]
3631
3705
+
Leu
TAA
[ENA]
¡û
>C231345089
CP094489
Actinomycetota
Paenarthrobacter ureafaciens AT [CP094489]
1281370
1281444
+
Leu
TAA
-
¡û
>C231433297
CP101180
Actinomycetota
Paenarthrobacter ureafaciens SD-2 [CP101180]
1339438
1339512
+
Leu
TAA
-
¡û
>C231433349
CP101185
Actinomycetota
Paenarthrobacter ureafaciens SD-1 [CP101185]
1328995
1329069
+
Leu
TAA
-
¡û
>C231580914
CP116670
Actinomycetota
Arthrobacter sp. OVS8 [CP116670]
1664693
1664619
-
Leu
TAA
-
¡û
>C231622353
CP119414
Actinomycetota
Paenarthrobacter sp. Y-19 [CP119414]
926269
926343
+
Leu
TAA
-
¡û
>C241063085
CP042172
Actinomycetota
Arthrobacter sp. KBS0702 [CP042172]
954158
954232
+
Leu
TAA
-
¡û
>C241071176
CP043010
Actinomycetota
Paenarthrobacter ureafaciens YL1 [CP043010]
1331711
1331785
+
Leu
TAA
-
¡û
>C241248400
CP123579
Actinomycetota
Paenarthrobacter sp. OM7 [CP123579]
1411497
1411571
+
Leu
TAA
-
¡û
>C241255177
CP124836
Actinomycetota
Arthrobacter sp. EM1 [CP124836]
644278
644352
+
Leu
TAA
-
¡û
>C241274949
CP127115
Actinomycetota
Paenarthrobacter sp. R1 [CP127115]
3683228
3683302
+
Leu
TAA
-
¡û
>C241327413
CP136441
Actinomycetota
Paenarthrobacter sp. AT5 [CP136441]
1240416
1240490
+
Leu
TAA
-
¡û
>C241327963
CP136562
Actinomycetota
Paenarthrobacter sp. GOM3 [CP136562]
1298384
1298458
+
Leu
TAA
-
¡û
>W2310027240
BSQI01000002
Actinomycetota
Paenarthrobacter ureafaciens NBRC 114184 [BSQI]
354797
354723
-
Leu
TAA
[ENA]
¡û
>W1510641743
CVLG01000001
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
1774689
1774763
+
Leu
TAA
[ENA]
¡û
>W1511319613
JPZK01000018
Actinomycetota
Arthrobacter sp. MWB30 [JPZK]
259630
259704
+
Leu
TAA
[ENA]
¡û
>C161001342
AP014719
Actinomycetota
Arthrobacter sp. Hiyo8 [AP014719]
1258076
1258002
-
Leu
TAA
-
¡û
>C161068050
CP014196
Actinomycetota
Arthrobacter sp. ATCC 21022 [CP014196]
1213443
1213519
+
Leu
TAA
-
¡û
>W121086807
AKKK01000015
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
62571
62497
-
Leu
TAA
[ENA]
¡û
>W1610050309
BBFS01000014
Actinomycetota
Paenarthrobacter nitroguajacolicus JCM 14115 [BBFS]
61978
62052
+
Leu
TAA
[ENA]
¡û
>W1610081877
BDDW01000002
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
284951
284877
-
Leu
TAA
[ENA]
¡û
>C131002301
CP003203
Actinomycetota
Arthrobacter sp. Rue61a [CP003203]
1295811
1295887
+
Leu
TAA
[Ensembl]
¡û
>W1610527124
JPWK01000016
Actinomycetota
Arthrobacter sp. ATCC 21022 ATCC 21022 KY 3901 [JPWK]
281015
281091
+
Leu
TAA
[ENA]
¡û
>W1610734402
LMLR01000015
Actinomycetota
Arthrobacter sp. Leaf69 [LMLR]
83299
83373
+
Leu
TAA
[ENA]
¡û
>W1610737959
LMON01000012
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
222071
222147
+
Leu
TAA
[ENA]
¡û
>W1610774436
LNUV01000003
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
143837
143913
+
Leu
TAA
[ENA]
¡û
>W1710046708
BBFS01000014
Actinomycetota
Paenarthrobacter nitroguajacolicus JCM 14115 [BBFS]
61978
62052
+
Leu
TAA
[ENA]
¡û
>W1710080592
BDDW01000002
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
284951
284877
-
Leu
TAA
[ENA]
¡û
>W1710084537
BDMH01000015
Actinomycetota
Paenarthrobacter ureafaciens KI72 [BDMH]
301666
301590
-
Leu
TAA
[ENA]
¡û
>W1710508496
FMWE01000002
Actinomycetota
Arthrobacter sp. UNCCL28 [FMWE]
587342
587268
-
Leu
TAA
[ENA]
¡û
>W1710521055
FNGC01000001
Actinomycetota
Arthrobacter sp. ok362 [FNGC]
101048
101122
+
Leu
TAA
[ENA]
¡û
>W1710521112
FNGD01000002
Actinomycetota
Arthrobacter sp. ov407 [FNGD]
370712
370638
-
Leu
TAA
[ENA]
¡û
>W1710525659
FNJS01000005
Actinomycetota
Arthrobacter sp. ok909 [FNJS]
122278
122204
-
Leu
TAA
[ENA]
¡û
>W1710528986
FNNR01000001
Actinomycetota
Arthrobacter sp. cf158 [FNNR]
353435
353509
+
Leu
TAA
[ENA]
¡û
>W1710541436
FNYI01000002
Actinomycetota
Arthrobacter sp. yr096 [FNYI]
298297
298223
-
Leu
TAA
[ENA]
¡û
>W1710603424
FUZB01000002
Actinomycetota
Arthrobacter sp. 31Cvi3.1E [FUZB]
281142
281068
-
Leu
TAA
[ENA]
¡û
>W1710603524
FUZD01000009
Actinomycetota
Arthrobacter sp. 49Tsu3.1M3 [FUZD]
60811
60737
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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