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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31181 (30 seq.)
>W1710877741
LMQJ01000011
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
3252
3163
-
Ser
TGA
[ENA]
¡û
>W1710892760
LNEC01000010
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
222133
222044
-
Ser
TGA
[ENA]
¡û
>W131226915
AUES01000047
Alphaproteobacteria
Bradyrhizobium sp. URHA0002 [AUES]
2362
2273
-
Ser
TGA
[ENA]
¡û
>C019047
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
3470486
3470575
+
Ser
TGA
[Ensembl]
¡û
>WENV180295195
OBIZ01035236
[OBIZ] soil metagenome; soil
818
729
-
Ser
TGA
[ENA]
¡û
>WENV180350765
OBLQ010009736
[OBLQ] soil metagenome; soil
635
724
+
Ser
TGA
[ENA]
¡û
>WENV180694648
OCZS012522913
[OCZS] soil metagenome; soil
75
164
+
Ser
TGA
[ENA]
¡û
>WENV183669313
ORJL010828519
[ORJL] groundwater metagenome; groundwater
397
486
+
Ser
TGA
[ENA]
¡û
>WENV183676997
ORJL011697269
[ORJL] groundwater metagenome; groundwater
1452
1363
-
Ser
TGA
[ENA]
¡û
>WENV183681317
ORMF010288318
[ORMF] groundwater metagenome; groundwater
342
253
-
Ser
TGA
[ENA]
¡û
>WENV183693206
ORMF012042473
[ORMF] groundwater metagenome; groundwater
8
97
+
Ser
TGA
[ENA]
¡û
>WENV170577028
FRDC01002814
[FRDC] freshwater metagenome; water
150959
150870
-
Ser
TGA
[ENA]
¡û
>WENV170660488
JXWT01116706
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
101
190
+
Ser
TGA
[ENA]
¡û
>WENV170709769
LNFM01000681
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12729
12640
-
Ser
TGA
[ENA]
¡û
>W09104381
AALQ01000003
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
78084
77995
-
Ser
TGA
[ENA]
¡û
>SRA1002845
SRR002326.55311
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
104
15
-
Ser
TGA
[SRA]
>W1810395547
PYCM01000583
Alphaproteobacteria
Bradyrhizobium algeriense RST89 [PYCM]
61553
61642
+
Ser
TGA
[ENA]
¡û
>W1810787526
QRDT01000030
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
29878
29789
-
Ser
TGA
[ENA]
¡û
>W1810884423
QUMP01000030
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
29878
29789
-
Ser
TGA
[ENA]
¡û
>W2011282812
QPFS01000024
Alphaproteobacteria
Rhodopseudomonas sp. WA056 [QPFS]
25129
25040
-
Ser
TGA
[ENA]
¡û
>W2011524867
SATS03000002
Alphaproteobacteria
Bradyrhizobium yuanmingense P10 130 [SATS]
730368
730279
-
Ser
TGA
[ENA]
¡û
>C211035882
CP030047
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 53421 [CP030047]
5027383
5027472
+
Ser
TGA
-
¡û
>C211146610
CP061379
Alphaproteobacteria
Bradyrhizobium genosp. B BDV5040 [CP061379]
3852396
3852485
+
Ser
TGA
-
¡û
>C231252814
CP088285
Alphaproteobacteria
Bradyrhizobium septentrionale 1S1 [CP088285]
7573499
7573588
+
Ser
TGA
-
¡û
>C11118759
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
3310829
3310918
+
Ser
TGA
[Ensembl]
¡û
>W1511625953
LCZM01000245
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
3242
3331
+
Ser
TGA
[ENA]
¡û
>W1511681476
LFIQ01000086
Alphaproteobacteria
Bradyrhizobium pachyrhizi PAC 48 [LFIQ]
5074
4985
-
Ser
TGA
[ENA]
¡û
>W1610740087
LMQJ01000011
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
3252
3163
-
Ser
TGA
[ENA]
¡û
>W1610753026
LNEC01000010
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
222133
222044
-
Ser
TGA
[ENA]
¡û
>W1710536635
FNTI01000001
Alphaproteobacteria
Bradyrhizobium lablabi [FNTI]
7619799
7619888
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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