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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
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Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.312281 (127 seq.)
>W1710778402
LJCW01000372
Actinomycetota
Actinobacteria bacterium OV450 [LJCW]
172655
172728
+
Ala
TGC
[ENA]
¡û
>W1710860266
LMCT01000003
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
60521
60594
+
Ala
TGC
[ENA]
¡û
>W1710866974
LMHX01000031
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
58937
59010
+
Ala
TGC
[ENA]
¡û
>W1711183453
LWLA01000049
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
255313
255386
+
Ala
TGC
[ENA]
¡û
>W1711183593
LWLD01000023
Actinomycetota
Streptomyces sp. CB03578 [LWLD]
182041
182114
+
Ala
TGC
[ENA]
¡û
>W1711627070
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
3567810
3567735
-
Ala
TGC
[ENA]
¡û
>W131204977
ATCJ01000005
Actinomycetota
Streptomyces sp. Mg1 [ATCJ]
4158207
4158280
+
Ala
TGC
[ENA]
¡û
>WENV180023330
FTHV01000258
[FTHV] metagenome; soil
1524
1451
-
Ala
TGC
[ENA]
¡û
>WENV180023460
FTHY01000255
[FTHY] metagenome; soil
1524
1451
-
Ala
TGC
[ENA]
¡û
>WENV180024706
FTIJ01000321
[FTIJ] metagenome; soil
4800
4873
+
Ala
TGC
[ENA]
¡û
>WENV180033141
FTKF01000324
[FTKF] metagenome; soil
2250
2323
+
Ala
TGC
[ENA]
¡û
>WENV180033644
FTKL01001019
[FTKL] metagenome; soil
25880
25953
+
Ala
TGC
[ENA]
¡û
>WENV180035038
FTKT01000343
[FTKT] metagenome; soil
57907
57834
-
Ala
TGC
[ENA]
¡û
>WENV180115117
OAPS01132864
[OAPS] marine metagenome; sea water
4
77
+
Ala
TGC
[ENA]
¡û
>WENV180363853
OBNZ01012972
[OBNZ] marine metagenome; ENVO:00002010
501
428
-
Ala
TGC
[ENA]
¡û
>W08006573
ABJF01000426
Actinomycetota
Streptomyces sp. Mg1 [ABJF]
14507
14580
+
Ala
TGC
[ENA]
¡û
>WENV181126237
OEFV01024374
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
444
517
+
Ala
TGC
[ENA]
¡û
>WENV181325342
OFLI01046844
[OFLI] seawater metagenome; seawater
311
384
+
Ala
TGC
[ENA]
¡û
>WENV181385787
OFRK01003522
[OFRK] marine metagenome; sea ice
635
708
+
Ala
TGC
[ENA]
¡û
>W141282685
JAIY01000004
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
637833
637906
+
Ala
TGC
[ENA]
¡û
>WENV183618786
OOFO01048174
[OOFO] marine metagenome; seawater
312
385
+
Ala
TGC
[ENA]
¡û
>WENV183629986
OOGR01002143
[OOGR] marine metagenome; seawater
76
3
-
Ala
TGC
[ENA]
¡û
>WENV183631244
OOGU01058185
[OOGU] marine metagenome; sea ice
124
51
-
Ala
TGC
[ENA]
¡û
>WENV170565606
FJVZ01000948
[FJVZ] metagenome; soil
7909
7836
-
Ala
TGC
[ENA]
¡û
>WENV170569926
FLMP01355562
[FLMP] seawater metagenome; seawater
136
211
+
Ala
TGC
[ENA]
¡û
>WENV170572065
FLOH01000508
[FLOH] marine metagenome; water
16949
17024
+
Ala
TGC
[ENA]
¡û
>WENV170572300
FLOH01000713
[FLOH] marine metagenome; water
62290
62215
-
Ala
TGC
[ENA]
¡û
>WENV170598874
FUWD010052828
[FUWD] metagenome; unknown
84
159
+
Ala
TGC
[ENA]
¡û
>WENV170616332
FUWD012885251
[FUWD] metagenome; unknown
851
924
+
Ala
TGC
[ENA]
¡û
>WENV170626706
FUWD013228993
[FUWD] metagenome; unknown
13230
13155
-
Ala
TGC
[ENA]
¡û
>WENV170627310
FUWD013232585
[FUWD] metagenome; unknown
1124
1197
+
Ala
TGC
[ENA]
¡û
>WENV170952143
MEHZ011585336
[MEHZ] marine metagenome; marine surface water
12
87
+
Ala
TGC
[ENA]
¡û
>WENV170952957
MEHZ011622381
[MEHZ] marine metagenome; marine surface water
73
1
-
Ala
TGC
[ENA]
¡û
>WENV170952986
MEHZ011623945
[MEHZ] marine metagenome; marine surface water
74
1
-
Ala
TGC
[ENA]
¡û
>WENV170953062
MEHZ011626781
[MEHZ] marine metagenome; marine surface water
21
96
+
Ala
TGC
[ENA]
¡û
>C181116293
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
4425602
4425675
+
Ala
TGC
-
¡û
>C181193512
CP030862
Actinomycetota
Streptomyces globosus LZH-48 [CP030862]
16537
16611
+
Ala
TGC
-
¡û
>C191108176
CP033581
Actinomycetota
Streptomyces sp. ADI95-16 [CP033581]
4245504
4245577
+
Ala
TGC
-
¡û
>W141757030
JNXO01006240
Actinomycetota
Kitasatospora misakiensis [JNXO]
125
52
-
Ala
TGC
[ENA]
¡û
>W141760286
JNZY01000003
Actinomycetota
Streptomyces katrae [JNZY]
237559
237632
+
Ala
TGC
[ENA]
¡û
>W141761573
JOAV01000800
Actinomycetota
Streptomyces sp. NRRL S-50 [JOAV]
1144
1071
-
Ala
TGC
[ENA]
¡û
>W141761940
JOBB01007458
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
827
900
+
Ala
TGC
[ENA]
¡û
>W141762441
JOBK01000448
Actinomycetota
Streptomyces sp. NRRL S-20 [JOBK]
369
296
-
Ala
TGC
[ENA]
¡û
>W141764742
JOCX01000001
Actinomycetota
Streptomyces sp. NRRL S-244 [JOCX]
344717
344644
-
Ala
TGC
[ENA]
¡û
>W141765001
JODB01003860
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
689
762
+
Ala
TGC
[ENA]
¡û
>W141766001
JODS01000003
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
210618
210545
-
Ala
TGC
[ENA]
¡û
>W141770046
JOGF01001623
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
668
741
+
Ala
TGC
[ENA]
¡û
>W141771132
JOGY01001119
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
2079
2006
-
Ala
TGC
[ENA]
¡û
>W141771953
JOHN01000019
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
48193
48266
+
Ala
TGC
[ENA]
¡û
>W141773823
JOIS01000003
Actinomycetota
Streptomyces sp. NRRL F-2747 [JOIS]
119210
119137
-
Ala
TGC
[ENA]
¡û
>W141818503
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
1406055
1405982
-
Ala
TGC
[ENA]
¡û
>W141820002
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
2641655
2641582
-
Ala
TGC
[ENA]
¡û
>W1911083568
NNBM01000003
Actinomycetota
Streptomyces sp. CB02120-2 [NNBM]
446395
446322
-
Ala
TGC
[ENA]
¡û
>W1911766160
QXDI01000001
Actinomycetota
Streptomyces sp. 3211.1 [QXDI]
4125598
4125525
-
Ala
TGC
[ENA]
¡û
>W1810072963
PEFP01000001
Actinomycetota
Streptomyces sp. 61 [PEFP]
3859192
3859119
-
Ala
TGC
[ENA]
¡û
>W1810173046
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
3449699
3449626
-
Ala
TGC
[ENA]
¡û
>W1810394672
PYBW01000013
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
97928
98001
+
Ala
TGC
[ENA]
¡û
>W1810907951
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
5711957
5712030
+
Ala
TGC
[ENA]
¡û
>SRA1019143
SRR035082.410020
454 Sequencing (SRP001803)
33
108
+
Ala
TGC
[SRA]
>SRA1023164
SRR035084.24738
454 Sequencing (SRP001805)
110
183
+
Ala
TGC
[SRA]
>SRA1025114
SRR035084.488212
454 Sequencing (SRP001805)
78
3
-
Ala
TGC
[SRA]
>C151086049
CP011664
Actinomycetota
Streptomyces sp. Mg1 [CP011664]
4166688
4166761
+
Ala
TGC
[Ensembl]
¡û
>W2010663158
JACBGN010000001
Actinomycetota
Streptomyces sp. BR123 [JACBGN]
74052
74125
+
Ala
TGC
[ENA]
¡û
>W2010705624
JACHJR010000001
Actinomycetota
Kitasatospora gansuensis DSM 44786 [JACHJR]
3891918
3891991
+
Ala
TGC
[ENA]
¡û
>W2010705890
JACHJV010000001
Actinomycetota
Kitasatospora kifunensis DSM 41654 [JACHJV]
3988743
3988670
-
Ala
TGC
[ENA]
¡û
>W2011006961
NNBM01000003
Actinomycetota
Streptomyces sp. CB02120-2 [NNBM]
446395
446322
-
Ala
TGC
[ENA]
¡û
>SRA1043830
SRR035092.181569
454 Sequencing (SRP001813)
172
97
-
Ala
TGC
[SRA]
>W2011324603
QXDI01000001
Actinomycetota
Streptomyces sp. 3211.1 [QXDI]
4125598
4125525
-
Ala
TGC
[ENA]
¡û
>W2011442675
RJUZ01000001
Actinomycetota
Streptomyces sp. 2132.2 [RJUZ]
3828520
3828447
-
Ala
TGC
[ENA]
¡û
>W2011461611
RPGS01000059
Actinomycetota
Streptomyces sp. ADI91-18 [RPGS]
33321
33394
+
Ala
TGC
[ENA]
¡û
>W2011472579
RPSE01000010
Actinomycetota
Streptomyces sp. WAC05292 [RPSE]
43088
43014
-
Ala
TGC
[ENA]
¡û
>W2011491067
RSFG01000002
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
2148817
2148744
-
Ala
TGC
[ENA]
¡û
>SRA1046466
SRR035093.314483
454 Sequencing (SRP001814)
205
278
+
Ala
TGC
[SRA]
>W2011625639
SLZC01000005
Actinomycetota
Streptomyces sp. BK038 [SLZC]
123166
123239
+
Ala
TGC
[ENA]
¡û
>W2011655890
SOCC01000001
Actinomycetota
Streptomyces sp. KS 21 [SOCC]
4218803
4218730
-
Ala
TGC
[ENA]
¡û
>W2011659002
SOEI01000001
Actinomycetota
Streptomyces sp. 25 [SOEI]
5392138
5392065
-
Ala
TGC
[ENA]
¡û
>W2011688089
SSBH01000022
Actinomycetota
Streptomyces sp. A1547 [SSBH]
136874
136801
-
Ala
TGC
[ENA]
¡û
>W2012038138
VIGB01000003
Actinomycetota
Kitasatospora sp. MMS16-CNU292 [VIGB]
4480343
4480270
-
Ala
TGC
[ENA]
¡û
>W2012047333
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
3951806
3951879
+
Ala
TGC
[ENA]
¡û
>W2012047334
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
3971681
3971754
+
Ala
TGC
[ENA]
¡û
>W2012047365
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
3970969
3970896
-
Ala
TGC
[ENA]
¡û
>W2012048954
VIWT01000001
Actinomycetota
Kitasatospora viridis DSM 44826 [VIWT]
2918004
2917931
-
Ala
TGC
[ENA]
¡û
>W2012473823
WWHK01000004
Actinomycetota
Streptomyces sp. SID7760 [WWHK]
1721
1794
+
Ala
TGC
[ENA]
¡û
>W2110039405
BMSD01000002
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
259757
259684
-
Ala
TGC
[ENA]
¡û
>W2110042308
BMTY01000002
Actinomycetota
Streptomyces toxytricini JCM 4421 [BMTY]
164657
164583
-
Ala
TGC
[ENA]
¡û
>W2110042505
BMUB01000003
Actinomycetota
Kitasatospora psammotica JCM 4434 [BMUB]
295638
295711
+
Ala
TGC
[ENA]
¡û
>W2110044398
BMVE01000004
Actinomycetota
Streptomyces goshikiensis JCM 4640 [BMVE]
235289
235362
+
Ala
TGC
[ENA]
¡û
>W2110053267
BNBO01000015
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
103289
103216
-
Ala
TGC
[ENA]
¡û
>W2110053702
BNBW01000014
Actinomycetota
Streptomyces vinaceus JCM 4849 [BNBW]
123091
123164
+
Ala
TGC
[ENA]
¡û
>W2110165992
JAAZTW010000081
Actinomycetota
Streptomyces sp. CJ_13 [JAAZTW]
622
549
-
Ala
TGC
[ENA]
¡û
>W2110277034
JACVWW010000001
Actinomycetota
Streptomyces sp. KD18 [JACVWW]
191876
191950
+
Ala
TGC
[ENA]
¡û
>W2110512227
JAFLQY010000003
Actinomycetota
Streptomyces sp. KCTC 0041BP [JAFLQY]
3166131
3166204
+
Ala
TGC
[ENA]
¡û
>W2110542201
JAGGOP010000008
Actinomycetota
Streptomyces sp. ISL-21 [JAGGOP]
3265
3192
-
Ala
TGC
[ENA]
¡û
>W2110542653
JAGGOX010000017
Actinomycetota
Streptomyces sp. ISL-86 [JAGGOX]
146566
146493
-
Ala
TGC
[ENA]
¡û
>W2110542708
JAGGOY010000008
Actinomycetota
Streptomyces sp. ISL-87 [JAGGOY]
191683
191756
+
Ala
TGC
[ENA]
¡û
>W2110556246
JAGIYX010000025
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
24082
24155
+
Ala
TGC
[ENA]
¡û
>W2110689250
JAINUL010000001
Actinomycetota
Streptomyces flavotricini NGL1 [JAINUL]
4546928
4546855
-
Ala
TGC
[ENA]
¡û
>C231571485
CP115936
Actinomycetota
Streptomyces sp. CGMCC 4.1796 [CP115936]
3802723
3802796
+
Ala
TGC
-
¡û
>C241026043
CP023692
Actinomycetota
Streptomyces vinaceus ATCC 27476 [CP023692]
3749688
3749615
-
Ala
TGC
-
¡û
>C241202534
CP107904
Actinomycetota
Kitasatospora sp. NBC_00458 [CP107904]
4590711
4590784
+
Ala
TGC
-
¡û
>C241205757
CP107983
Actinomycetota
Streptomyces sp. NBC_00354 [CP107983]
4345701
4345628
-
Ala
TGC
-
¡û
>C241208052
CP108362
Actinomycetota
Streptomyces sp. NBC_01343 [CP108362]
4254701
4254774
+
Ala
TGC
-
¡û
>C241208694
CP108404
Actinomycetota
Kitasatospora sp. NBC_01302 [CP108404]
4821217
4821290
+
Ala
TGC
-
¡û
>C241209265
CP108439
Actinomycetota
Streptomyces sp. NBC_01278 [CP108439]
4261968
4262041
+
Ala
TGC
-
¡û
>C241209680
CP108458
Actinomycetota
Kitasatospora sp. NBC_01266 [CP108458]
4394710
4394637
-
Ala
TGC
-
¡û
>C241209718
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
4637532
4637605
+
Ala
TGC
-
¡û
>C241210117
CP108476
Actinomycetota
Kitasatospora sp. NBC_01250 [CP108476]
4797059
4797132
+
Ala
TGC
-
¡û
>C241210220
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
5034735
5034662
-
Ala
TGC
-
¡û
>C241210258
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
4439687
4439760
+
Ala
TGC
-
¡û
>C241211612
CP108557
Actinomycetota
Streptomyces sp. NBC_01205 [CP108557]
2814636
2814709
+
Ala
TGC
-
¡û
>C241211706
CP108561
Actinomycetota
Kitasatospora purpeofusca NBC_01203 [CP108561]
5003510
5003437
-
Ala
TGC
-
¡û
>C241211776
CP108562
Actinomycetota
Kitasatospora purpeofusca NBC_01202 [CP108562]
4932964
4932891
-
Ala
TGC
-
¡û
>C241212202
CP108577
Actinomycetota
Streptomyces goshikiensis NBC_01191 [CP108577]
4165312
4165385
+
Ala
TGC
-
¡û
>C241296198
CP130720
Actinomycetota
Streptomyces sp. NBC_01296 [CP130720]
4489005
4488932
-
Ala
TGC
-
¡û
>C241321825
CP134877
Actinomycetota
Kitasatospora sp. CM 4170 [CP134877]
4760986
4761059
+
Ala
TGC
-
¡û
>W1511529065
JYJF01000034
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
36515
36440
-
Ala
TGC
[ENA]
¡û
>W1511555586
JZWX01000517
Actinomycetota
Streptomyces sp. NRRL S-444 [JZWX]
208
135
-
Ala
TGC
[ENA]
¡û
>W1511555632
JZWY01000104
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
37240
37313
+
Ala
TGC
[ENA]
¡û
>W1511684156
LFML01000075
Actinomycetota
Streptomyces roseus ATCC 31245 [LFML]
3767
3840
+
Ala
TGC
[ENA]
¡û
>W1511695876
LGDB01000001
Actinomycetota
Streptomyces sp. WM6372 [LGDB]
145150
145077
-
Ala
TGC
[ENA]
¡û
>W1511696763
LGDO01000001
Actinomycetota
Streptomyces sp. XY431 [LGDO]
31610
31537
-
Ala
TGC
[ENA]
¡û
>W1511698172
LGHN01000157
Actinomycetota
Streptomyces sp. XY332 [LGHN]
7314
7387
+
Ala
TGC
[ENA]
¡û
>W1610642621
LJCW01000372
Actinomycetota
Actinobacteria bacterium OV450 [LJCW]
172655
172728
+
Ala
TGC
[ENA]
¡û
>W1610722612
LMCT01000003
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
60521
60594
+
Ala
TGC
[ENA]
¡û
>W1610729320
LMHX01000031
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
58937
59010
+
Ala
TGC
[ENA]
¡û
>WENV000926
AACY020029126
Marine microbial communities from Global Ocean Sampling (GOS)
1663
1588
-
Ala
TGC
[ENA]
>W1710772913
LIVP01000005
Actinomycetota
Streptomyces sp. MJM1172 [LIVP]
105014
104941
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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