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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.312318 (27 seq.)
>W1711926245
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
5672
5747
+
Glu
TTC
[ENA]
¡û
>W1711926280
NADJ01000036
Bacillota
Desulfosporosinus sp. FKB [NADJ]
200961
200886
-
Glu
TTC
[ENA]
¡û
>W1711932731
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
2117
2042
-
Glu
TTC
[ENA]
¡û
>W1711932756
NAHZ01000032
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
123830
123905
+
Glu
TTC
[ENA]
¡û
>WENV180254892
OBEQ010676357
[OBEQ] groundwater metagenome; groundwater
182
107
-
Glu
TTC
[ENA]
¢þ
>WENV183673782
ORJL011317769
[ORJL] groundwater metagenome; groundwater
447
522
+
Glu
TTC
[ENA]
¢þ
>W1511187113
JMGA01000022
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
19212
19137
-
Glu
TTC
[ENA]
¡û
>W1511187136
JMGA01000060
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
583
658
+
Glu
TTC
[ENA]
¡û
>W1511187142
JMGA01000078
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
21478
21553
+
Glu
TTC
[ENA]
¡û
>W1511187156
JMGA01000080
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
287
362
+
Glu
TTC
[ENA]
¡û
>W1511564559
LADV01000101
Bacillota
Peptococcaceae bacterium BRH_c23 [LADV]
7141
7216
+
Glu
TTC
[ENA]
¡û
>W1511564569
LADV01000225
Bacillota
Peptococcaceae bacterium BRH_c23 [LADV]
12911
12836
-
Glu
TTC
[ENA]
¡û
>W1511646009
LDZY01000003
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
251139
251064
-
Glu
TTC
[ENA]
¡û
>W1511646035
LDZY01000036
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
4435
4510
+
Glu
TTC
[ENA]
¡û
>C121005925
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
107652
107727
+
Glu
TTC
[Ensembl]
¡û
>C121005960
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
5823356
5823281
-
Glu
TTC
[Ensembl]
¡û
>C121005978
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
3773737
3773662
-
Glu
TTC
[Ensembl]
¡û
>C121014766
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
101648
101723
+
Glu
TTC
[Ensembl]
¡û
>C121014794
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
1636233
1636308
+
Glu
TTC
[Ensembl]
¡û
>C121014807
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
4829989
4829914
-
Glu
TTC
[Ensembl]
¡û
>C121014818
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
3015558
3015483
-
Glu
TTC
[Ensembl]
¡û
>C121014842
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
102978
103053
+
Glu
TTC
[Ensembl]
¡û
>C121014875
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
4884943
4884868
-
Glu
TTC
[Ensembl]
¡û
>W121010448
AGJG01000005
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
133847
133922
+
Glu
TTC
[ENA]
¡û
>W1710586626
FQXJ01000003
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
133086
133161
+
Glu
TTC
[ENA]
¡û
>W1710586646
FQXJ01000018
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
28378
28453
+
Glu
TTC
[ENA]
¡û
>W1710586666
FQXJ01000032
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
40033
40108
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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