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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.312380 (135 seq.)
>WENV180275641
OBHU01000028
[OBHU] human gut metagenome; feces
129069
129144
+
Val
TAC
[ENA]
¢þ
>WENV180275981
OBHU01001220
[OBHU] human gut metagenome; feces
76
1
-
Val
TAC
[ENA]
¢þ
>WENV180276172
OBHU01005290
[OBHU] human gut metagenome; feces
2904
2979
+
Val
TAC
[ENA]
¢þ
>WENV180276365
OBHU01013855
[OBHU] human gut metagenome; feces
77
2
-
Val
TAC
[ENA]
¢þ
>WENV180346671
OBLN01212969
[OBLN] sediment metagenome; sediment
47
122
+
Val
TAC
[ENA]
¢þ
>WENV180515514
OCHC01000203
[OCHC] human gut metagenome; human gut
76717
76792
+
Val
TAC
[ENA]
¢þ
>WENV180516015
OCHC01001510
[OCHC] human gut metagenome; human gut
16560
16635
+
Val
TAC
[ENA]
¢þ
>WENV180527383
OCHJ01000098
[OCHJ] human gut metagenome; human gut
137538
137613
+
Val
TAC
[ENA]
¢þ
>WENV180528100
OCHJ01001375
[OCHJ] human gut metagenome; human gut
428
503
+
Val
TAC
[ENA]
¢þ
>WENV180528139
OCHJ01001581
[OCHJ] human gut metagenome; human gut
13385
13310
-
Val
TAC
[ENA]
¢þ
>WENV180528583
OCHJ01008717
[OCHJ] human gut metagenome; human gut
77
2
-
Val
TAC
[ENA]
¢þ
>WENV180545916
OCIU01000182
[OCIU] human gut metagenome; human gut
66342
66417
+
Val
TAC
[ENA]
¢þ
>WENV180546732
OCIU01004064
[OCIU] human gut metagenome; human gut
77
2
-
Val
TAC
[ENA]
¢þ
>WENV180547108
OCIU01013874
[OCIU] human gut metagenome; human gut
77
2
-
Val
TAC
[ENA]
¢þ
>WENV180601899
OCPR01000109
[OCPR] human gut metagenome; human gut
101924
101999
+
Val
TAC
[ENA]
¢þ
>WENV180603209
OCPR01067315
[OCPR] human gut metagenome; human gut
9
84
+
Val
TAC
[ENA]
¢þ
>WENV180621999
OCQC01010232
[OCQC] human gut metagenome; human gut
76
1
-
Val
TAC
[ENA]
¢þ
>WENV180622703
OCQC01119733
[OCQC] human gut metagenome; human gut
9
84
+
Val
TAC
[ENA]
¢þ
>WENV180628039
OCQO01024372
[OCQO] human gut metagenome; human gut
127
202
+
Val
TAC
[ENA]
¢þ
>WENV180628290
OCQO01090943
[OCQO] human gut metagenome; human gut
146
221
+
Val
TAC
[ENA]
¢þ
>WENV180628452
OCQO01140472
[OCQO] human gut metagenome; human gut
2
77
+
Val
TAC
[ENA]
¢þ
>WENV180651329
OCSZ01118041
[OCSZ] human gut metagenome; human gut
61
136
+
Val
TAC
[ENA]
¢þ
>WENV180657267
OCVV010644504
[OCVV] gut metagenome; gut
127
55
-
Val
TAC
[ENA]
¢þ
>WENV180657268
OCVV010644504
[OCVV] gut metagenome; gut
127
55
-
Val
TAC
[ENA]
¢þ
>WENV180658145
OCVV010735892
[OCVV] gut metagenome; gut
26
101
+
Val
TAC
[ENA]
¢þ
>WENV180658149
OCVV010735892
[OCVV] gut metagenome; gut
26
101
+
Val
TAC
[ENA]
¢þ
>WENV180662373
OCVV011074526
[OCVV] gut metagenome; gut
586
661
+
Val
TAC
[ENA]
¢þ
>WENV180662374
OCVV011074526
[OCVV] gut metagenome; gut
586
661
+
Val
TAC
[ENA]
¢þ
>WENV180671311
OCVV011315766
[OCVV] gut metagenome; gut
677
605
-
Val
TAC
[ENA]
¢þ
>WENV180671315
OCVV011315766
[OCVV] gut metagenome; gut
677
605
-
Val
TAC
[ENA]
¢þ
>WENV180676525
OCVV011442857
[OCVV] gut metagenome; gut
61
134
+
Val
TAC
[ENA]
¢þ
>WENV180676526
OCVV011442857
[OCVV] gut metagenome; gut
61
134
+
Val
TAC
[ENA]
¢þ
>WENV180685771
OCVV012877068
[OCVV] gut metagenome; gut
21384
21309
-
Val
TAC
[ENA]
¢þ
>WENV180685774
OCVV012877068
[OCVV] gut metagenome; gut
21384
21309
-
Val
TAC
[ENA]
¢þ
>WENV180827222
ODKA01000113
[ODKA] human metagenome; G_DNA_Stool
78419
78344
-
Val
TAC
[ENA]
¢þ
>WENV180827283
ODKA01000153
[ODKA] human metagenome; G_DNA_Stool
102612
102687
+
Val
TAC
[ENA]
¢þ
>WENV180827958
ODKA01001840
[ODKA] human metagenome; G_DNA_Stool
2792
2867
+
Val
TAC
[ENA]
¢þ
>WENV180913909
ODSV01001666
[ODSV] human metagenome; G_DNA_Stool
5990
5915
-
Val
TAC
[ENA]
¢þ
>WENV180913953
ODSV01002241
[ODSV] human metagenome; G_DNA_Stool
135
60
-
Val
TAC
[ENA]
¢þ
>WENV181022368
ODWW01000441
[ODWW] human metagenome; G_DNA_Stool
20056
19981
-
Val
TAC
[ENA]
¢þ
>WENV181022520
ODWW01001302
[ODWW] human metagenome; G_DNA_Stool
9
84
+
Val
TAC
[ENA]
¢þ
>WENV181069793
OEAD01000427
[OEAD] human gut metagenome; human gut
187
112
-
Val
TAC
[ENA]
¢þ
>WENV181131864
OEGE01000006
[OEGE] human metagenome; G_DNA_Stool
241758
241683
-
Val
TAC
[ENA]
¢þ
>WENV181481788
OGFJ01000028
[OGFJ] metagenome; Human gut stool
853
778
-
Val
TAC
[ENA]
¢þ
>WENV181556247
OGIU01006345
[OGIU] metagenome; Human gut stool
5
80
+
Val
TAC
[ENA]
¢þ
>WENV181642962
OGNH01002601
[OGNH] metagenome; Human gut stool
2142
2067
-
Val
TAC
[ENA]
¢þ
>W141167938
AXUN02000135
Bacillota
Youngiibacter fragilis 232.1 [AXUN]
47336
47261
-
Val
TAC
[ENA]
¡û
>W141167940
AXUN02000135
Bacillota
Youngiibacter fragilis 232.1 [AXUN]
47137
47062
-
Val
TAC
[ENA]
¡û
>WENV181724387
OGPX01002629
[OGPX] human gut metagenome; faeces
7384
7459
+
Val
TAC
[ENA]
¢þ
>W141265784
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
82904
82979
+
Val
TAC
[ENA]
¡û
>W141265787
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
83165
83240
+
Val
TAC
[ENA]
¡û
>W141265790
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
83426
83501
+
Val
TAC
[ENA]
¡û
>W141265793
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
83687
83762
+
Val
TAC
[ENA]
¡û
>W141265796
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
83948
84023
+
Val
TAC
[ENA]
¡û
>W141265799
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
84209
84284
+
Val
TAC
[ENA]
¡û
>W141265802
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
84470
84545
+
Val
TAC
[ENA]
¡û
>W141265805
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
84731
84806
+
Val
TAC
[ENA]
¡û
>W141265808
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
84992
85067
+
Val
TAC
[ENA]
¡û
>W141265811
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
85253
85328
+
Val
TAC
[ENA]
¡û
>WENV182768120
OJRV01004252
[OJRV] human gut metagenome; human gut
3639
3714
+
Val
TAC
[ENA]
¢þ
>WENV182777248
OJSC01000976
[OJSC] human gut metagenome; human gut
2261
2186
-
Val
TAC
[ENA]
¢þ
>WENV183065671
OLIJ01004691
[OLIJ] metagenome; faeces
641
566
-
Val
TAC
[ENA]
¢þ
>WENV183074132
OLIU01009517
[OLIU] human gut metagenome; stool sample
2498
2573
+
Val
TAC
[ENA]
¢þ
>WENV183084034
OLJF01000024
[OLJF] metagenome; faeces
84028
83953
-
Val
TAC
[ENA]
¢þ
>WENV183084189
OLJF01000063
[OLJF] metagenome; faeces
179935
180010
+
Val
TAC
[ENA]
¢þ
>WENV183084596
OLJF01000303
[OLJF] metagenome; faeces
4669
4594
-
Val
TAC
[ENA]
¢þ
>WENV183085159
OLJF01001859
[OLJF] metagenome; faeces
1083
1158
+
Val
TAC
[ENA]
¢þ
>WENV183085431
OLJF01004587
[OLJF] metagenome; faeces
741
666
-
Val
TAC
[ENA]
¢þ
>WENV183086443
OLJF01041542
[OLJF] metagenome; faeces
1153
1078
-
Val
TAC
[ENA]
¢þ
>WENV183223001
OLQM01005322
[OLQM] human gut metagenome; faeces
8292
8367
+
Val
TAC
[ENA]
¢þ
>WENV183288678
OLSG01000269
[OLSG] human gut metagenome; faeces
37625
37550
-
Val
TAC
[ENA]
¢þ
>WENV183288680
OLSG01000270
[OLSG] human gut metagenome; faeces
25342
25267
-
Val
TAC
[ENA]
¢þ
>WENV183294950
OLSL01000083
[OLSL] human gut metagenome; faeces
69155
69080
-
Val
TAC
[ENA]
¢þ
>WENV183313717
OLVR01000142
[OLVR] human gut metagenome; faeces
1067
992
-
Val
TAC
[ENA]
¢þ
>WENV183349319
OLWW01000133
[OLWW] human gut metagenome; feces
1666
1591
-
Val
TAC
[ENA]
¢þ
>WENV183424726
OMBK01000001
[OMBK] human gut metagenome; feces
231103
231028
-
Val
TAC
[ENA]
¢þ
>WENV183424805
OMBK01000044
[OMBK] human gut metagenome; feces
83933
84008
+
Val
TAC
[ENA]
¢þ
>WENV183434566
OMBZ01010073
[OMBZ] human gut metagenome; feces
1059
984
-
Val
TAC
[ENA]
¢þ
>WENV183450848
OMDA01007532
[OMDA] human gut metagenome; feces
1278
1203
-
Val
TAC
[ENA]
¢þ
>WENV183465475
OMEB01000001
[OMEB] human gut metagenome; feces
515973
515898
-
Val
TAC
[ENA]
¢þ
>WENV183468925
OMEI01000001
[OMEI] human gut metagenome; feces
20699
20774
+
Val
TAC
[ENA]
¢þ
>WENV183469096
OMEI01000291
[OMEI] human gut metagenome; feces
541
616
+
Val
TAC
[ENA]
¢þ
>WENV183477651
OMFC01007256
[OMFC] human gut metagenome; feces
1590
1515
-
Val
TAC
[ENA]
¢þ
>WENV183484105
OMFO01000781
[OMFO] human gut metagenome; feces
8823
8898
+
Val
TAC
[ENA]
¢þ
>WENV183531038
OOAC01000066
[OOAC] human gut metagenome; human gut
61198
61273
+
Val
TAC
[ENA]
¢þ
>WENV183541766
OOAM01000021
[OOAM] human gut metagenome; human gut
162576
162651
+
Val
TAC
[ENA]
¢þ
>WENV183560282
OOBT01016740
[OOBT] human gut metagenome; human gut
1
76
+
Val
TAC
[ENA]
¢þ
>WENV183573475
OOCH01000108
[OOCH] human gut metagenome; human gut
39921
39846
-
Val
TAC
[ENA]
¢þ
>WENV183593524
OODB01000165
[OODB] human gut metagenome; human gut
73364
73439
+
Val
TAC
[ENA]
¢þ
>WENV183770647
PPYE01438780
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2231
2156
-
Val
TAC
[ENA]
¢þ
>WENV170015660
AZII01001626
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
108
183
+
Val
TAC
[ENA]
¢þ
>WENV170043478
CDYU01039612
[CDYU] gut metagenome; human stools
450
525
+
Val
TAC
[ENA]
¢þ
>WENV170070079
CDZQ01013635
[CDZQ] gut metagenome; human stools
131
56
-
Val
TAC
[ENA]
¢þ
>WENV170070805
CDZQ01036392
[CDZQ] gut metagenome; human stools
73376
73451
+
Val
TAC
[ENA]
¢þ
>WENV170071506
CDZQ01058415
[CDZQ] gut metagenome; human stools
30135
30210
+
Val
TAC
[ENA]
¢þ
>WENV170071535
CDZQ01060071
[CDZQ] gut metagenome; human stools
3733
3808
+
Val
TAC
[ENA]
¢þ
>WENV170085692
CEAB01060367
[CEAB] gut metagenome; human stools
43652
43577
-
Val
TAC
[ENA]
¢þ
>WENV170688295
LFRM01238303
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
631
556
-
Val
TAC
[ENA]
¢þ
>WENV170688298
LFRM01238303
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
352
277
-
Val
TAC
[ENA]
¢þ
>W09133458
ACPD01000003
Bacillota
Clostridium cellulovorans 743B [ACPD]
151030
150955
-
Val
TAC
[ENA]
¡û
>W09133461
ACPD01000007
Bacillota
Clostridium cellulovorans 743B [ACPD]
41991
41916
-
Val
TAC
[ENA]
¡û
>W09133497
ACPD01000094
Bacillota
Clostridium cellulovorans 743B [ACPD]
7659
7734
+
Val
TAC
[ENA]
¡û
>W141732455
JNKC01000004
Bacillota
Proteiniclasticum ruminis DSM 24773 [JNKC]
326000
325925
-
Val
TAC
[ENA]
¡û
>W141732458
JNKC01000004
Bacillota
Proteiniclasticum ruminis DSM 24773 [JNKC]
325730
325655
-
Val
TAC
[ENA]
¡û
>W1910501426
FYAM01000024
Bacillota
Clostridium sp. BSD9I1 [FYAM]
264414
264339
-
Val
TAC
[ENA]
¡û
>W1910501435
FYAM01000025
Bacillota
Clostridium sp. BSD9I1 [FYAM]
43404
43479
+
Val
TAC
[ENA]
¡û
>W1910501439
FYAM01000025
Bacillota
Clostridium sp. BSD9I1 [FYAM]
43746
43821
+
Val
TAC
[ENA]
¡û
>W1910637542
LQGW01000035
Bacillota
Clostridiaceae bacterium JG1575 [LQGW]
63077
63002
-
Val
TAC
[ENA]
¡û
>W1911491347
OAOD01000013
Bacillota
Clostridium peptidivorans [OAOD]
82494
82569
+
Val
TAC
[ENA]
¡û
>W1911491354
OAOD01000015
Bacillota
Clostridium peptidivorans [OAOD]
238
313
+
Val
TAC
[ENA]
¡û
>W1911491364
OAOD01000024
Bacillota
Clostridium peptidivorans [OAOD]
43251
43326
+
Val
TAC
[ENA]
¡û
>W1810808325
QRVY01000004
Bacillota
Ruminococcus bromii AF21-10LB [QRVY]
22374
22299
-
Val
TAC
[ENA]
¡û
>W1810808337
QRVY01000011
Bacillota
Ruminococcus bromii AF21-10LB [QRVY]
14915
14840
-
Val
TAC
[ENA]
¡û
>W1810808354
QRVY01000080
Bacillota
Ruminococcus bromii AF21-10LB [QRVY]
101
26
-
Val
TAC
[ENA]
¡û
>W1810864446
QTWC01000004
Bacillota
Ruminococcus sp. AF26-25AA [QTWC]
158345
158270
-
Val
TAC
[ENA]
¡û
>W1810864454
QTWC01000011
Bacillota
Ruminococcus sp. AF26-25AA [QTWC]
773
698
-
Val
TAC
[ENA]
¡û
>W1810871658
QUDE01000003
Bacillota
Ruminococcaceae bacterium AM07-15 [QUDE]
111908
111833
-
Val
TAC
[ENA]
¡û
>C10102781
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
2372627
2372702
+
Val
TAC
[Ensembl]
¡û
>C10102790
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
5226352
5226277
-
Val
TAC
[Ensembl]
¡û
>C10102793
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
5226059
5225984
-
Val
TAC
[Ensembl]
¡û
>C10102810
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
3737555
3737480
-
Val
TAC
[Ensembl]
¡û
>W1511186994
JMFY01000008
Bacillota
Clostridium sp. HMP27 [JMFY]
290
365
+
Val
TAC
[ENA]
¡û
>W1511186998
JMFY01000008
Bacillota
Clostridium sp. HMP27 [JMFY]
630
705
+
Val
TAC
[ENA]
¡û
>W1511187002
JMFY01000011
Bacillota
Clostridium sp. HMP27 [JMFY]
54149
54224
+
Val
TAC
[ENA]
¡û
>W11184314
BABR01000312
Bacillota
Clostridium cellulovorans 743B [BABR]
42179
42104
-
Val
TAC
[ENA]
¡û
>W11184339
BABR01000406
Bacillota
Clostridium cellulovorans 743B [BABR]
422
347
-
Val
TAC
[ENA]
¡û
>W11184351
BABR01000488
Bacillota
Clostridium cellulovorans 743B [BABR]
60
135
+
Val
TAC
[ENA]
¡û
>C161103815
FP929051
Bacillota
Ruminococcus bromii [FP929051]
1287308
1287383
+
Val
TAC
-
¡û
>W1710518396
FNDZ01000003
Bacillota
Proteiniclasticum ruminis [FNDZ]
35800
35875
+
Val
TAC
[ENA]
¡û
>W1710518399
FNDZ01000003
Bacillota
Proteiniclasticum ruminis [FNDZ]
36070
36145
+
Val
TAC
[ENA]
¡û
>W1710570847
FOVK01000017
Bacillota
Proteiniclasticum ruminis [FOVK]
246
171
-
Val
TAC
[ENA]
¡û
>W1710588662
FQZO01000001
Bacillota
Clostridium amylolyticum [FQZO]
117919
117994
+
Val
TAC
[ENA]
¡û
>W1710588670
FQZO01000002
Bacillota
Clostridium amylolyticum [FQZO]
538416
538341
-
Val
TAC
[ENA]
¡û
>W1710588673
FQZO01000002
Bacillota
Clostridium amylolyticum [FQZO]
538163
538088
-
Val
TAC
[ENA]
¡û
>W1710588697
FQZO01000006
Bacillota
Clostridium amylolyticum [FQZO]
142683
142608
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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