This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.312428 (39 seq.)
>W131231665
AUIQ01000051
Bacillota
Tetragenococcus muriaticus DSM 15685 [AUIQ]
534
608
+
Val
TAC
[ENA]
¡û
>W131231677
AUIQ01000081
Bacillota
Tetragenococcus muriaticus DSM 15685 [AUIQ]
4900
4828
-
Val
TAC
[ENA]
¡û
>WENV180428475
OBWC01000351
[OBWC] human gut metagenome; faeces
588
513
-
Val
TAC
[ENA]
¢þ
>WENV180428598
OBWC01000829
[OBWC] human gut metagenome; faeces
14698
14773
+
Val
TAC
[ENA]
¢þ
>WENV180651091
OCSZ01063250
[OCSZ] human gut metagenome; human gut
464
389
-
Val
TAC
[ENA]
¢þ
>WENV180701861
ODEE01000681
[ODEE] human metagenome; G_DNA_Stool
36108
36183
+
Val
TAC
[ENA]
¢þ
>WENV180701962
ODEE01001073
[ODEE] human metagenome; G_DNA_Stool
15004
15079
+
Val
TAC
[ENA]
¢þ
>WENV180747161
ODHN01002371
[ODHN] human metagenome; G_DNA_Stool
6143
6068
-
Val
TAC
[ENA]
¢þ
>WENV180747718
ODHN01014816
[ODHN] human metagenome; G_DNA_Stool
2233
2308
+
Val
TAC
[ENA]
¢þ
>WENV181133986
OEGF01010307
[OEGF] human metagenome; G_DNA_Stool
2228
2303
+
Val
TAC
[ENA]
¢þ
>WENV181508699
OGGQ01001208
[OGGQ] metagenome; Human gut stool
5132
5207
+
Val
TAC
[ENA]
¢þ
>WENV181718558
OGPT01025661
[OGPT] human gut metagenome; faeces
751
826
+
Val
TAC
[ENA]
¢þ
>WENV182414283
OIFY01078863
[OIFY] human gut metagenome; human gut
478
403
-
Val
TAC
[ENA]
¢þ
>WENV182479457
OIQT01000722
[OIQT] human gut metagenome; human gut
511
586
+
Val
TAC
[ENA]
¢þ
>WENV182655568
OJMI01054924
[OJMI] human gut metagenome; feces
712
787
+
Val
TAC
[ENA]
¢þ
>WENV182971996
OKXI01007358
[OKXI] human gut metagenome; human gut
1403
1478
+
Val
TAC
[ENA]
¢þ
>C191055610
CP027768
Bacillota
Tetragenococcus halophilus LMG 26042 [CP027768]
2321463
2321389
-
Val
TAC
-
¡û
>C191055626
CP027768
Bacillota
Tetragenococcus halophilus LMG 26042 [CP027768]
300557
300485
-
Val
TAC
-
¡û
>C191055635
CP027768
Bacillota
Tetragenococcus halophilus LMG 26042 [CP027768]
224360
224288
-
Val
TAC
-
¡û
>W141810419
JPVT01000010
Bacillota
Tetragenococcus muriaticus 3MR10-3 [JPVT]
228
302
+
Val
TAC
[ENA]
¡û
>W141810453
JPVT01000279
Bacillota
Tetragenococcus muriaticus 3MR10-3 [JPVT]
44
116
+
Val
TAC
[ENA]
¡û
>W141810505
JPVU01000301
Bacillota
Tetragenococcus muriaticus PMC-11-5 [JPVU]
315
389
+
Val
TAC
[ENA]
¡û
>W141810507
JPVU01000326
Bacillota
Tetragenococcus muriaticus PMC-11-5 [JPVU]
11
83
+
Val
TAC
[ENA]
¡û
>W1910007402
BDDZ01000163
Bacillota
Tetragenococcus halophilus subsp. halophilus 11 [BDDZ]
682
610
-
Val
TAC
[ENA]
¡û
>W1910007512
BDEB01000266
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7116 [BDEB]
682
610
-
Val
TAC
[ENA]
¡û
>W1910007523
BDEB01000273
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7116 [BDEB]
278
352
+
Val
TAC
[ENA]
¡û
>W1910007545
BDEC01000134
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7118 [BDEC]
67
139
+
Val
TAC
[ENA]
¡û
>W1910007581
BDEC01000206
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7118 [BDEC]
77
3
-
Val
TAC
[ENA]
¡û
>W1910007668
BDEE01000199
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7125 [BDEE]
73
145
+
Val
TAC
[ENA]
¡û
>W1910007678
BDEE01000218
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7125 [BDEE]
296
370
+
Val
TAC
[ENA]
¡û
>W1910007699
BDEF01000151
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7126 [BDEF]
682
610
-
Val
TAC
[ENA]
¡û
>W1910007721
BDEF01000196
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7126 [BDEF]
77
3
-
Val
TAC
[ENA]
¡û
>W1910007864
BDEI01000106
Bacillota
Tetragenococcus halophilus subsp. halophilus D-86 [BDEI]
85
157
+
Val
TAC
[ENA]
¡û
>W1910007887
BDEI01000219
Bacillota
Tetragenococcus halophilus subsp. halophilus D-86 [BDEI]
13122
13048
-
Val
TAC
[ENA]
¡û
>W1910067240
BEXB01000045
Bacillota
Sporolactobacillus inulinus NBRC111894 [BEXB]
11614
11687
+
Val
TAC
[ENA]
¡û
>W1910067261
BEXB01000111
Bacillota
Sporolactobacillus inulinus NBRC111894 [BEXB]
6
78
+
Val
TAC
[ENA]
¡û
>C121000354
AP012046
Bacillota
Tetragenococcus halophilus NBRC 12172 [AP012046]
2524673
2524601
-
Val
TAC
[Ensembl]
¡û
>C121000363
AP012046
Bacillota
Tetragenococcus halophilus NBRC 12172 [AP012046]
2441757
2441685
-
Val
TAC
[Ensembl]
¡û
>C121000391
AP012046
Bacillota
Tetragenococcus halophilus NBRC 12172 [AP012046]
2052109
2052035
-
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK