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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.312436 (24 seq.)
>WENV182412482
OIFT01002095
[OIFT] human gut metagenome; stool
694
619
-
Ala
TGC
[ENA]
¡û
>WENV182418008
OIGE01002594
[OIGE] human gut metagenome; human gut
768
693
-
Ala
TGC
[ENA]
¡û
>WENV182831766
OKEH01001606
[OKEH] human gut metagenome; human gut
781
706
-
Ala
TGC
[ENA]
¡û
>WENV182962014
OKWM01000438
[OKWM] human gut metagenome; stool
103
178
+
Ala
TGC
[ENA]
¡û
>WENV170695440
LGVE01094764
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
895
820
-
Ala
TGC
[ENA]
¡û
>WENV170696186
LGVF01001434
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
2214
2139
-
Ala
TGC
[ENA]
¡û
>W1911003509
NLFL01000050
Gammaproteobacteria
Gallibacterium anatis SV200 [NLFL]
3289
3214
-
Ala
TGC
[ENA]
¡û
>W1911003512
NLFL01000053
Gammaproteobacteria
Gallibacterium anatis SV200 [NLFL]
2324
2399
+
Ala
TGC
[ENA]
¡û
>W1911003515
NLFL01000055
Gammaproteobacteria
Gallibacterium anatis SV200 [NLFL]
1423
1498
+
Ala
TGC
[ENA]
¡û
>W2011000212
NLFL01000050
Gammaproteobacteria
Gallibacterium anatis SV200 [NLFL]
3289
3214
-
Ala
TGC
[ENA]
¡û
>W2011000215
NLFL01000053
Gammaproteobacteria
Gallibacterium anatis SV200 [NLFL]
2324
2399
+
Ala
TGC
[ENA]
¡û
>W2011000218
NLFL01000055
Gammaproteobacteria
Gallibacterium anatis SV200 [NLFL]
1423
1498
+
Ala
TGC
[ENA]
¡û
>W2011000272
NLFM01000036
Gammaproteobacteria
Gallibacterium anatis 2PKA3 [NLFM]
1482
1407
-
Ala
TGC
[ENA]
¡û
>W2110326508
JADION010000037
Gammaproteobacteria
Gallibacterium anatis 1637 [JADION]
13031
12956
-
Ala
TGC
[ENA]
¡û
>C231529012
CP110225
Gammaproteobacteria
Gallibacterium anatis IMT49310 [CP110225]
180043
180118
+
Ala
TGC
-
¡û
>C231529042
CP110225
Gammaproteobacteria
Gallibacterium anatis IMT49310 [CP110225]
2314648
2314723
+
Ala
TGC
-
¡û
>C231529049
CP110225
Gammaproteobacteria
Gallibacterium anatis IMT49310 [CP110225]
1798592
1798517
-
Ala
TGC
-
¡û
>C231558079
CP114281
Gammaproteobacteria
Gallibacterium anatis ESV200 [CP114281]
242783
242858
+
Ala
TGC
-
¡û
>C231558109
CP114281
Gammaproteobacteria
Gallibacterium anatis ESV200 [CP114281]
2488712
2488787
+
Ala
TGC
-
¡û
>C231558117
CP114281
Gammaproteobacteria
Gallibacterium anatis ESV200 [CP114281]
1948681
1948606
-
Ala
TGC
-
¡û
>W1511303540
JPJM01000051
Gammaproteobacteria
Gallibacterium anatis str. Avicor [JPJM]
846
771
-
Ala
TGC
[ENA]
¡û
>W1511303672
JPJP01000012
Gammaproteobacteria
Gallibacterium anatis 23T10 [JPJP]
232
157
-
Ala
TGC
[ENA]
¡û
>W1511318039
JPXP01000032
Gammaproteobacteria
Gallibacterium anatis 36961/Sv7 [JPXP]
33537
33612
+
Ala
TGC
[ENA]
¡û
>ENV000723
AJ937675
Environmental sample from ENV division of INSDC
1770
1847
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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