This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.312458 (49 seq.)
>W1711630289
MPQD01000002
Gammaproteobacteria
Solemya velum gill symbiont [MPQD]
229364
229289
-
Ala
TGC
[ENA]
¡û
>W1711630364
MPQF01000002
Gammaproteobacteria
Solemya velum gill symbiont [MPQF]
214611
214686
+
Ala
TGC
[ENA]
¡û
>W1711630601
MPQL01000002
Gammaproteobacteria
Solemya velum gill symbiont [MPQL]
49569
49644
+
Ala
TGC
[ENA]
¡û
>W1711630863
MPQS01000003
Gammaproteobacteria
Solemya velum gill symbiont [MPQS]
125563
125638
+
Ala
TGC
[ENA]
¡û
>W1711631320
MPRE01000002
Gammaproteobacteria
Solemya velum gill symbiont [MPRE]
38022
37947
-
Ala
TGC
[ENA]
¡û
>W1711631411
MPRG01000009
Gammaproteobacteria
Solemya velum gill symbiont [MPRG]
45669
45744
+
Ala
TGC
[ENA]
¡û
>W1711631711
MPRO01000001
Gammaproteobacteria
Solemya velum gill symbiont [MPRO]
120136
120061
-
Ala
TGC
[ENA]
¡û
>W1711631950
MPRU01000001
Gammaproteobacteria
Solemya velum gill symbiont [MPRU]
130793
130718
-
Ala
TGC
[ENA]
¡û
>W1711632005
MPRV01000010
Gammaproteobacteria
Solemya velum gill symbiont [MPRV]
19517
19592
+
Ala
TGC
[ENA]
¡û
>W1711632025
MPRW01000001
Gammaproteobacteria
Solemya velum gill symbiont [MPRW]
43200
43275
+
Ala
TGC
[ENA]
¡û
>W1711632088
MPRX01000027
Gammaproteobacteria
Solemya velum gill symbiont [MPRX]
3414
3339
-
Ala
TGC
[ENA]
¡û
>W1711632104
MPRY01000004
Gammaproteobacteria
Solemya velum gill symbiont [MPRY]
15681
15606
-
Ala
TGC
[ENA]
¡û
>W1711632156
MPRZ01000028
Gammaproteobacteria
Solemya velum gill symbiont [MPRZ]
27213
27288
+
Ala
TGC
[ENA]
¡û
>WENV180586595
OCOM01144291
[OCOM] marine metagenome; seawater
251
176
-
Ala
TGC
[ENA]
¡û
>WENV180637306
OCRG01007897
[OCRG] marine metagenome; seawater
914
989
+
Ala
TGC
[ENA]
¡û
>WENV181315893
OFJR01002232
[OFJR] marine metagenome; seawater
515
440
-
Ala
TGC
[ENA]
¡û
>WENV181391623
OFRT01029396
[OFRT] seawater metagenome; seawater
174
99
-
Ala
TGC
[ENA]
¡û
>WENV181393037
OFRX01035538
[OFRX] seawater metagenome; seawater
453
378
-
Ala
TGC
[ENA]
¡û
>WENV182558084
OJDL01003930
[OJDL] seawater metagenome; Sea water
2569
2494
-
Ala
TGC
[ENA]
¡û
>WENV182559349
OJDO01024322
[OJDO] seawater metagenome; Sea water
81
156
+
Ala
TGC
[ENA]
¡û
>WENV182591274
OJIL01007910
[OJIL] seawater metagenome; Sea water
387
462
+
Ala
TGC
[ENA]
¡û
>WENV183056326
OLHI01008105
[OLHI] seawater metagenome; Sea water
123
198
+
Ala
TGC
[ENA]
¡û
>C151091909
CP012154
Gammaproteobacteria
Wenzhouxiangella marina KCTC 42284 [CP012154]
242527
242602
+
Ala
TGC
-
¡û
>W2010071373
AOML01000865
Gammaproteobacteria
Marinobacter salsuginis SD-14B [AOML]
217
142
-
Ala
TGC
[ENA]
¡û
>W2010080627
BGZI01000081
Gammaproteobacteria
Marinobacter salsuginis NBRC 109114 [BGZI]
119
194
+
Ala
TGC
[ENA]
¡û
>W2010380388
FMSV02000537
Gammaproteobacteria
Thiotrichales bacterium HS_08 [FMSV]
73777
73702
-
Ala
TGC
[ENA]
¡û
>W2010380389
FMSV02000537
Gammaproteobacteria
Thiotrichales bacterium HS_08 [FMSV]
73079
73004
-
Ala
TGC
[ENA]
¡û
>W2010470499
JAAGSC010000023
Gammaproteobacteria
Wenzhouxiangella sp. C33 [JAAGSC]
59195
59120
-
Ala
TGC
[ENA]
¡û
>W2010588734
JABCKY010000017
Gammaproteobacteria
Marinobacter sp. W62 [JABCKY]
175
100
-
Ala
TGC
[ENA]
¡û
>W2011373822
RBIN01000015
Gammaproteobacteria
Kushneria sinocarnis DSM 23229 [RBIN]
3448
3373
-
Ala
TGC
[ENA]
¡û
>W2110048184
BMXV01000018
Gammaproteobacteria
Marinobacter zhanjiangensis KCTC 22280 [BMXV]
508
583
+
Ala
TGC
[ENA]
¡û
>W2110048186
BMXV01000019
Gammaproteobacteria
Marinobacter zhanjiangensis KCTC 22280 [BMXV]
499
574
+
Ala
TGC
[ENA]
¡û
>W2110430045
JAEMVF010000049
Gammaproteobacteria
Marinobacter sp. MC3 [JAEMVF]
212
137
-
Ala
TGC
[ENA]
¡û
>W2110661564
JAHXRN010000017
Gammaproteobacteria
Marinobacter adhaerens CS1 [JAHXRN]
2008
2083
+
Ala
TGC
[ENA]
¡û
>C231531143
CP110342
Gammaproteobacteria
Marinobacter sp. AN1 [CP110342]
1217608
1217683
+
Ala
TGC
-
¡û
>C231531149
CP110342
Gammaproteobacteria
Marinobacter sp. AN1 [CP110342]
1888597
1888672
+
Ala
TGC
-
¡û
>C231531158
CP110342
Gammaproteobacteria
Marinobacter sp. AN1 [CP110342]
3497961
3497886
-
Ala
TGC
-
¡û
>C11113756
CP001978
Gammaproteobacteria
Marinobacter adhaerens HP15 [CP001978]
356192
356267
+
Ala
TGC
[Ensembl]
¡û
>C11113762
CP001978
Gammaproteobacteria
Marinobacter adhaerens HP15 [CP001978]
556322
556397
+
Ala
TGC
[Ensembl]
¡û
>C11113766
CP001978
Gammaproteobacteria
Marinobacter adhaerens HP15 [CP001978]
1300644
1300719
+
Ala
TGC
[Ensembl]
¡û
>W11168382
AFOC01000137
Gammaproteobacteria
endosymbiont of Riftia pachyptila Riftia pachyptila (vent Ph05) [AFOC]
2234
2309
+
Ala
TGC
[ENA]
¡û
>W11177244
AFZB01000059
Gammaproteobacteria
endosymbiont of Tevnia jerichonana Tevnia jerichonana (vent Tica) [AFZB]
3931
3856
-
Ala
TGC
[ENA]
¡û
>W1610594334
LDXT01000057
Gammaproteobacteria
endosymbiont of Ridgeia piscesae [LDXT]
3899
3974
+
Ala
TGC
[ENA]
¡û
>ENV002827
AY934317
Environmental sample from ENV division of INSDC
328
403
+
Ala
TGC
[ENA]
>ENV002888
AY934351
Environmental sample from ENV division of INSDC
327
402
+
Ala
TGC
[ENA]
>W1710508482
FMWD01000026
Gammaproteobacteria
Thiohalomonas denitrificans [FMWD]
1920
1995
+
Ala
TGC
[ENA]
¡û
>W1710558539
FOLY01000012
Gammaproteobacteria
Kushneria avicenniae [FOLY]
1872
1947
+
Ala
TGC
[ENA]
¡û
>W1710560199
FONF01000001
Gammaproteobacteria
Marinobacter sp. DSM 26671 [FONF]
330145
330070
-
Ala
TGC
[ENA]
¡û
>W1710713786
LDXT01000057
Gammaproteobacteria
endosymbiont of Ridgeia piscesae [LDXT]
3899
3974
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK