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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.312468 (9 seq.)
>W1711421348
MHYI01000232
Planctomycetota
Planctomycetes bacterium RBG_16_41_13 [MHYI]
13494
13419
-
Lys
CTT
[ENA]
¡û
>WENV180258175
OBEQ010981497
[OBEQ] groundwater metagenome; groundwater
1496
1423
-
Lys
CTT
[ENA]
¡û
>C181227244
LT934425
Planctomycetota
Candidatus Kuenenia stuttgartiensis [LT934425]
2526194
2526269
+
Lys
CTT
-
¡û
>W1911498163
OCTL01000034
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
14049
13974
-
Lys
CTT
[ENA]
¡û
>W1911498215
OCTL01000138
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
18210
18135
-
Lys
CTT
[ENA]
¡û
>W2011159067
OCTL01000034
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
14049
13974
-
Lys
CTT
[ENA]
¡û
>W2011159119
OCTL01000138
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
18210
18135
-
Lys
CTT
[ENA]
¡û
>C201220931
CP049055
Unclassified
Candidatus Kuenenia stuttgartiensis CSTR1 [CP049055]
4144332
4144257
-
Lys
CTT
-
¡û
>ENV003081
CT573073
Environmental sample from ENV division of INSDC
368777
368854
+
Lys
CTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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