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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.312873 (85 seq.)
>W1710786977
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2345365
2345289
-
Met
CAT
[ENA]
¡û
>W1710860315
LMCT01000067
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
241867
241943
+
Met
CAT
[ENA]
¡û
>W1710866990
LMHX01000045
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
241819
241895
+
Met
CAT
[ENA]
¡û
>W1711183444
LWLA01000045
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
171802
171726
-
Met
CAT
[ENA]
¡û
>W1711627046
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
5008849
5008923
+
Met
CAT
[ENA]
¡û
>C171109505
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
4038047
4038121
+
Met
CAT
-
¡û
>WENV180016670
FSVS01000474
[FSVS] metagenome; soil
129
55
-
Ile2
CAT
[ENA]
¡û
>WENV180023348
FTHV01000972
[FTHV] metagenome; soil
559
485
-
Ile2
CAT
[ENA]
¡û
>WENV180023478
FTHY01000952
[FTHY] metagenome; soil
559
485
-
Ile2
CAT
[ENA]
¡û
>WENV180024736
FTIJ01001894
[FTIJ] metagenome; soil
1895
1969
+
Ile2
CAT
[ENA]
¡û
>WENV180028937
FTJH01614694
[FTJH] metagenome; soil
566
640
+
Ile2
CAT
[ENA]
¡û
>WENV180033619
FTKL01000489
[FTKL] metagenome; soil
25564
25490
-
Ile2
CAT
[ENA]
¡û
>W141282713
JAIY01000007
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
267786
267862
+
Met
CAT
[ENA]
¡û
>W141282806
JAIZ01000817
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
1461
1535
+
Met
CAT
[ENA]
¡û
>WENV170565613
FJVZ01001072
[FJVZ] metagenome; soil
985
911
-
Met
CAT
[ENA]
¡û
>C181116278
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
2647313
2647388
+
Met
CAT
-
¡û
>W141755535
JNWQ01000020
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
44669
44593
-
Met
CAT
[ENA]
¡û
>W141755623
JNWR01000012
Actinomycetota
Kitasatospora aureofaciens [JNWR]
60261
60187
-
Met
CAT
[ENA]
¡û
>W141757005
JNXO01000603
Actinomycetota
Kitasatospora misakiensis [JNXO]
1710
1634
-
Met
CAT
[ENA]
¡û
>W141759694
JNZN01001639
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
924
848
-
Met
CAT
[ENA]
¡û
>W141761778
JOAY01000026
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
41856
41932
+
Met
CAT
[ENA]
¡û
>W141761932
JOBB01004330
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
353
429
+
Met
CAT
[ENA]
¡û
>W141763692
JOCF01000012
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
110232
110308
+
Met
CAT
[ENA]
¡û
>W141765005
JODB01005181
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
1000
924
-
Met
CAT
[ENA]
¡û
>W141766023
JODS01000019
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
81031
81107
+
Met
CAT
[ENA]
¡û
>W141766910
JOEH01000004
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
441268
441192
-
Met
CAT
[ENA]
¡û
>W141767529
JOER01000021
Actinomycetota
Kitasatospora aureofaciens [JOER]
37270
37196
-
Met
CAT
[ENA]
¡û
>W141768756
JOFK01000020
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
60719
60793
+
Met
CAT
[ENA]
¡û
>W141770060
JOGF01003690
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
2299
2375
+
Met
CAT
[ENA]
¡û
>W141770105
JOGG01000032
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
37262
37188
-
Met
CAT
[ENA]
¡û
>W141771128
JOGY01001061
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
4467
4391
-
Met
CAT
[ENA]
¡û
>W141771644
JOHH01002806
Actinomycetota
Streptomyces sp. NRRL B-2030 [JOHH]
1232
1308
+
Met
CAT
[ENA]
¡û
>W141771977
JOHN01000048
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
34149
34225
+
Met
CAT
[ENA]
¡û
>W141772020
JOHO01000005
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
36217
36141
-
Met
CAT
[ENA]
¡û
>W141819739
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
2586736
2586810
+
Met
CAT
[ENA]
¡û
>W141820090
JQMQ01000005
Actinomycetota
Phaeacidiphilus oryzae TH49 [JQMQ]
5144320
5144244
-
Met
CAT
[ENA]
¡û
>W1911494818
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
5250587
5250661
+
Met
CAT
[ENA]
¡û
>W1810907994
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
4184191
4184117
-
Met
CAT
[ENA]
¡û
>W2010705643
JACHJR010000001
Actinomycetota
Kitasatospora gansuensis DSM 44786 [JACHJR]
5602858
5602933
+
Ile2
CAT
[ENA]
¡û
>W2011155722
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
5250587
5250661
+
Ile2
CAT
[ENA]
¡û
>W2011388896
RBXE01000001
Actinomycetota
Streptomyces sp. 1114.5 [RBXE]
2837377
2837451
+
Ile2
CAT
[ENA]
¡û
>W2011491091
RSFG01000003
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
408834
408909
+
Ile2
CAT
[ENA]
¡û
>W2011655088
SOBN01000003
Actinomycetota
Streptomyces sp. 846.5 [SOBN]
126250
126175
-
Ile2
CAT
[ENA]
¡û
>W2012047383
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
2172002
2171927
-
Ile2
CAT
[ENA]
¡û
>W2012230679
WBOF01000001
Actinomycetota
Streptomyces kaniharaensis SF-557 [WBOF]
1601609
1601534
-
Ile2
CAT
[ENA]
¡û
>W2110039419
BMSD01000004
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
177742
177667
-
Ile2
CAT
[ENA]
¡û
>W2110042495
BMUB01000002
Actinomycetota
Kitasatospora psammotica JCM 4434 [BMUB]
60680
60754
+
Ile2
CAT
[ENA]
¡û
>W2110053237
BNBO01000005
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
58283
58208
-
Ile2
CAT
[ENA]
¡û
>W2110053823
BNBY01000010
Actinomycetota
Kitasatospora xanthocidica JCM 4862 [BNBY]
91466
91541
+
Ile2
CAT
[ENA]
¡û
>W2110140335
JAAFYY010000001
Actinomycetota
Streptacidiphilus sp. 4-A2 [JAAFYY]
5057700
5057774
+
Ile2
CAT
[ENA]
¡û
>W2110189100
JABVEB010000270
Actinomycetota
Actinomadura sp. HBU206391 [JABVEB]
732
657
-
Ile2
CAT
[ENA]
¡û
>W2110189112
JABVEC010000001
Actinomycetota
Actinomadura alba HBUM206468 [JABVEC]
4408
4334
-
Ile2
CAT
[ENA]
¡û
>W2110511750
JAFLNG010000279
Actinomycetota
Streptomyces sp. FH025 [JAFLNG]
5866
5941
+
Ile2
CAT
[ENA]
¡û
>W2110556228
JAGIYX010000012
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
103402
103477
+
Ile2
CAT
[ENA]
¡û
>W2110645355
JAHTKP010000002
Actinomycetota
Kitasatospora aureofaciens CPD02 [JAHTKP]
52254
52329
+
Ile2
CAT
[ENA]
¡û
>C201037019
CP023698
Actinomycetota
Streptomyces viridifaciens ATCC 11989 [CP023698]
5242978
5243052
+
Ile2
CAT
-
¡û
>C201213344
CP048289
Actinomycetota
Streptacidiphilus sp. P02-A3a [CP048289]
1852009
1851935
-
Ile2
CAT
-
¡û
>C201215072
CP048405
Actinomycetota
Streptacidiphilus sp. PB12-B1b [CP048405]
1679729
1679655
-
Ile2
CAT
-
¡û
>W1510013921
BBPL01000002
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
365447
365373
-
Met
CAT
[ENA]
¡û
>W1510013999
BBPM01000017
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
140202
140278
+
Met
CAT
[ENA]
¡û
>W2110746827
LFMD02000003
Actinomycetota
Kitasatospora sp. SUK 42 [LFMD]
858057
857982
-
Ile2
CAT
[ENA]
¡û
>W2110748582
MECK01000083
Actinomycetota
Streptomyces sp. CBMA123 [MECK]
4183
4258
+
Ile2
CAT
[ENA]
¡û
>C231284941
CP090841
Actinomycetota
Streptomyces viridifaciens DSM 40239 [CP090841]
5129236
5129310
+
Ile2
CAT
-
¡û
>W2110751234
MSJQ01000120
Actinomycetota
Streptomyces sp. CBMA156 [MSJQ]
3490
3565
+
Ile2
CAT
[ENA]
¡û
>W2110751249
MSJQ01000244
Actinomycetota
Streptomyces sp. CBMA156 [MSJQ]
5971
6046
+
Ile2
CAT
[ENA]
¡û
>C231566213
CP115450
Actinomycetota
Kitasatospora sp. HUAS 3-15 [CP115450]
5868767
5868842
+
Ile2
CAT
-
¡û
>C241202577
CP107904
Actinomycetota
Kitasatospora sp. NBC_00458 [CP107904]
2973040
2972965
-
Ile2
CAT
-
¡û
>C241209769
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
3040090
3040015
-
Ile2
CAT
-
¡û
>C241210200
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
6632186
6632261
+
Ile2
CAT
-
¡û
>C241210302
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
2935661
2935586
-
Ile2
CAT
-
¡û
>C241211721
CP108561
Actinomycetota
Kitasatospora purpeofusca NBC_01203 [CP108561]
3492286
3492211
-
Ile2
CAT
-
¡û
>C241211791
CP108562
Actinomycetota
Kitasatospora purpeofusca NBC_01202 [CP108562]
3354695
3354620
-
Ile2
CAT
-
¡û
>C241321869
CP134877
Actinomycetota
Kitasatospora sp. CM 4170 [CP134877]
3258489
3258414
-
Ile2
CAT
-
¡û
>W2130038304
JAHSQD010000615
Actinomycetota
Streptomyces sp. LS1784 [JAHSQD]
4379
4305
-
Ile2
CAT
[ENA]
¡û
>W1511311692
JPRF01000492
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
26246
26320
+
Met
CAT
[ENA]
¡û
>W1511529101
JYJF01000165
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
8671
8595
-
Met
CAT
[ENA]
¡û
>W1511545236
JZKH01000012
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
83810
83886
+
Met
CAT
[ENA]
¡û
>W1511555619
JZWY01000073
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
1232
1308
+
Met
CAT
[ENA]
¡û
>W1511590443
LBHA01000086
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
7937
8011
+
Met
CAT
[ENA]
¡û
>W1511687892
LFVW01000080
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
3036
2960
-
Met
CAT
[ENA]
¡û
>W1511696815
LGDO01000457
Actinomycetota
Streptomyces sp. XY431 [LGDO]
47181
47105
-
Met
CAT
[ENA]
¡û
>W1610650832
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2345365
2345289
-
Met
CAT
[ENA]
¡û
>W1610722661
LMCT01000067
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
241867
241943
+
Met
CAT
[ENA]
¡û
>W1610729336
LMHX01000045
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
241819
241895
+
Met
CAT
[ENA]
¡û
>W1710765798
LIPD01000001
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
247756
247832
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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