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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.313041 (107 seq.)
>W1711094311
LTFV01000002
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
156807
156882
+
Lys
TTT
[ENA]
¡û
>W1711094936
LTGK01000007
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
156345
156420
+
Lys
TTT
[ENA]
¡û
>W1711095183
LTGO01000086
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
6040
5965
-
Lys
TTT
[ENA]
¡û
>W1711098437
LTJO01000029
Actinomycetota
Rothia sp. HMSC064D08 [LTJO]
58000
58075
+
Lys
TTT
[ENA]
¡û
>W1711098702
LTJU01000114
Actinomycetota
Corynebacterium sp. HMSC055A01 [LTJU]
170
95
-
Lys
TTT
[ENA]
¡û
>W1711103633
LTOW01000048
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
6043
5968
-
Lys
TTT
[ENA]
¡û
>W1711105906
LTRH01000006
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
12675
12750
+
Lys
TTT
[ENA]
¡û
>W1711107200
LTSO01000033
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
6047
5972
-
Lys
TTT
[ENA]
¡û
>W1711107910
LTTG01000014
Actinomycetota
Rothia sp. HMSC065D02 [LTTG]
9212
9139
-
Lys
TTT
[ENA]
¡û
>W1711109762
LTUY01000011
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
3007
3082
+
Lys
TTT
[ENA]
¡û
>W1711185136
LWNC01000044
Actinomycetota
Rothia sp. HMSC08A08 [LWNC]
8365
8292
-
Lys
TTT
[ENA]
¡û
>W1711517389
MLJM01000052
Actinomycetota
Corynebacterium sp. HMSC074A01 [MLJM]
24030
23955
-
Lys
TTT
[ENA]
¡û
>W1712077707
NGUZ01000017
Actinomycetota
Corynebacterium kefirresidentii OG2 [NGUZ]
1257
1182
-
Lys
TTT
[ENA]
¡û
>WENV180711418
ODFN01004156
[ODFN] human metagenome; G_DNA_Anterior nares
80
7
-
Lys
TTT
[ENA]
¢þ
>WENV180731362
ODGW01000185
[ODGW] human metagenome; G_DNA_Supragingival plaque
3442
3515
+
Lys
TTT
[ENA]
¢þ
>WENV180731462
ODGW01000777
[ODGW] human metagenome; G_DNA_Supragingival plaque
8347
8274
-
Lys
TTT
[ENA]
¢þ
>WENV180733015
ODGY01015998
[ODGY] human metagenome; G_DNA_Supragingival plaque
1007
1080
+
Lys
TTT
[ENA]
¢þ
>WENV180750162
ODHS01000594
[ODHS] human metagenome; G_DNA_Supragingival plaque
6949
7022
+
Lys
TTT
[ENA]
¢þ
>WENV180751401
ODHS01049423
[ODHS] human metagenome; G_DNA_Supragingival plaque
132
59
-
Lys
TTT
[ENA]
¢þ
>WENV180765707
ODIC01036913
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
118
45
-
Lys
TTT
[ENA]
¢þ
>WENV180766241
ODIE01000207
[ODIE] human metagenome; G_DNA_Anterior nares
3507
3434
-
Lys
TTT
[ENA]
¢þ
>WENV180777203
ODIL01000390
[ODIL] human metagenome; G_DNA_Supragingival plaque
5595
5522
-
Lys
TTT
[ENA]
¢þ
>WENV180777260
ODIL01000773
[ODIL] human metagenome; G_DNA_Supragingival plaque
789
862
+
Lys
TTT
[ENA]
¢þ
>WENV180781536
ODIP01000588
[ODIP] human metagenome; G_DNA_Supragingival plaque
6045
6118
+
Lys
TTT
[ENA]
¢þ
>WENV180803981
ODJG01000244
[ODJG] human metagenome; G_DNA_Supragingival plaque
34844
34771
-
Lys
TTT
[ENA]
¢þ
>WENV180804025
ODJG01000352
[ODJG] human metagenome; G_DNA_Supragingival plaque
20229
20156
-
Lys
TTT
[ENA]
¢þ
>WENV180813952
ODJO01004187
[ODJO] human metagenome; G_DNA_Supragingival plaque
7261
7188
-
Lys
TTT
[ENA]
¢þ
>WENV180832033
ODKC01000366
[ODKC] human metagenome; G_DNA_Supragingival plaque
37715
37642
-
Lys
TTT
[ENA]
¢þ
>WENV180832771
ODKC01004155
[ODKC] human metagenome; G_DNA_Supragingival plaque
90
17
-
Lys
TTT
[ENA]
¢þ
>WENV180833772
ODKD01000217
[ODKD] human metagenome; G_DNA_Supragingival plaque
13377
13304
-
Lys
TTT
[ENA]
¢þ
>WENV180835976
ODKE01024802
[ODKE] human metagenome; G_DNA_Supragingival plaque
1063
1136
+
Lys
TTT
[ENA]
¢þ
>WENV180836284
ODKE01090154
[ODKE] human metagenome; G_DNA_Supragingival plaque
140
67
-
Lys
TTT
[ENA]
¢þ
>WENV180843291
ODKN01001622
[ODKN] human metagenome; G_DNA_Supragingival plaque
5471
5398
-
Lys
TTT
[ENA]
¢þ
>WENV180843707
ODKN01008737
[ODKN] human metagenome; G_DNA_Supragingival plaque
993
1066
+
Lys
TTT
[ENA]
¢þ
>WENV180844711
ODKO01000108
[ODKO] human metagenome; G_DNA_Anterior nares
1419
1346
-
Lys
TTT
[ENA]
¢þ
>WENV180846015
ODKT01003936
[ODKT] human metagenome; G_DNA_Supragingival plaque
6828
6901
+
Lys
TTT
[ENA]
¢þ
>WENV180857301
ODLA01035694
[ODLA] human metagenome; G_DNA_Buccal mucosa
230
303
+
Lys
TTT
[ENA]
¢þ
>WENV180881803
ODMB01000046
[ODMB] human metagenome; G_DNA_Buccal mucosa
5089
5162
+
Lys
TTT
[ENA]
¢þ
>WENV180888492
ODMN01001229
[ODMN] human metagenome; G_DNA_Supragingival plaque
5636
5709
+
Lys
TTT
[ENA]
¢þ
>WENV180891600
ODMQ01001975
[ODMQ] human metagenome; G_DNA_Supragingival plaque
310
237
-
Lys
TTT
[ENA]
¢þ
>WENV180930263
ODTO01001369
[ODTO] human metagenome; G_DNA_Buccal mucosa
2343
2270
-
Lys
TTT
[ENA]
¢þ
>WENV180934040
ODTR01014428
[ODTR] human metagenome; G_DNA_Supragingival plaque
85
12
-
Lys
TTT
[ENA]
¢þ
>WENV180934976
ODTS01015695
[ODTS] human metagenome; G_DNA_Subgingival plaque
970
1043
+
Lys
TTT
[ENA]
¢þ
>WENV180935012
ODTS01021713
[ODTS] human metagenome; G_DNA_Subgingival plaque
75
2
-
Lys
TTT
[ENA]
¢þ
>WENV180958240
ODUL01001499
[ODUL] human metagenome; G_DNA_Supragingival plaque
563
636
+
Lys
TTT
[ENA]
¢þ
>WENV180958796
ODUL01053548
[ODUL] human metagenome; G_DNA_Supragingival plaque
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV180981209
ODVE01010452
[ODVE] human metagenome; G_DNA_Supragingival plaque
90
17
-
Lys
TTT
[ENA]
¢þ
>WENV181003782
ODVX01035211
[ODVX] human metagenome; G_DNA_Supragingival plaque
1036
1109
+
Lys
TTT
[ENA]
¢þ
>WENV181008298
ODWE01003658
[ODWE] human metagenome; G_DNA_Supragingival plaque
500
573
+
Lys
TTT
[ENA]
¢þ
>WENV181009206
ODWE01039580
[ODWE] human metagenome; G_DNA_Supragingival plaque
993
1066
+
Lys
TTT
[ENA]
¢þ
>WENV181040327
ODXR01000018
[ODXR] human metagenome; G_DNA_Anterior nares
47578
47651
+
Lys
TTT
[ENA]
¢þ
>WENV181049774
ODYD01002073
[ODYD] human metagenome; G_DNA_Supragingival plaque
629
556
-
Lys
TTT
[ENA]
¢þ
>WENV181049897
ODYD01003071
[ODYD] human metagenome; G_DNA_Supragingival plaque
5674
5601
-
Lys
TTT
[ENA]
¢þ
>WENV181063623
ODYP01001924
[ODYP] human metagenome; G_DNA_Supragingival plaque
88
15
-
Lys
TTT
[ENA]
¢þ
>WENV181064521
ODYP01040502
[ODYP] human metagenome; G_DNA_Supragingival plaque
171
98
-
Lys
TTT
[ENA]
¢þ
>WENV181076073
OEAP01001555
[OEAP] human metagenome; G_DNA_Supragingival plaque
5856
5929
+
Lys
TTT
[ENA]
¢þ
>WENV181076090
OEAP01001662
[OEAP] human metagenome; G_DNA_Supragingival plaque
7110
7183
+
Lys
TTT
[ENA]
¢þ
>WENV181082904
OEAV01001232
[OEAV] human metagenome; G_DNA_Supragingival plaque
7200
7127
-
Lys
TTT
[ENA]
¢þ
>WENV181083073
OEAV01002198
[OEAV] human metagenome; G_DNA_Supragingival plaque
8543
8616
+
Lys
TTT
[ENA]
¢þ
>WENV181123654
OEFQ01000228
[OEFQ] human metagenome; G_DNA_Supragingival plaque
18564
18491
-
Lys
TTT
[ENA]
¢þ
>WENV181131740
OEGD01014238
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
358
431
+
Lys
TTT
[ENA]
¢þ
>WENV181135816
OEGI01000002
[OEGI] human metagenome; G_DNA_Supragingival plaque
517780
517707
-
Lys
TTT
[ENA]
¢þ
>WENV181143449
OEHM01000877
[OEHM] human metagenome; G_DNA_Supragingival plaque
7297
7224
-
Lys
TTT
[ENA]
¢þ
>WENV181152400
OEIA01001239
[OEIA] human metagenome; G_DNA_Supragingival plaque
5824
5751
-
Lys
TTT
[ENA]
¢þ
>WENV181160088
OEIK01001898
[OEIK] human metagenome; G_DNA_Supragingival plaque
1226
1153
-
Lys
TTT
[ENA]
¢þ
>WENV181160176
OEIK01002845
[OEIK] human metagenome; G_DNA_Supragingival plaque
1007
1080
+
Lys
TTT
[ENA]
¢þ
>WENV181182929
OEJV01080408
[OEJV] human metagenome; G_DNA_Supragingival plaque
445
372
-
Lys
TTT
[ENA]
¢þ
>WENV181212452
OFBQ01000166
[OFBQ] metagenome; hydrothermal vent
1679
1606
-
Lys
TTT
[ENA]
¢þ
>WENV181212540
OFBR01000278
[OFBR] metagenome; hydrothermal vent
3957
3884
-
Lys
TTT
[ENA]
¢þ
>WENV181212611
OFBS01000210
[OFBS] metagenome; hydrothermal vent
2370
2297
-
Lys
TTT
[ENA]
¢þ
>WENV181326306
OFLL01000100
[OFLL] metagenome; faeces
37376
37449
+
Lys
TTT
[ENA]
¢þ
>W141154947
AXLO01000006
Actinomycetota
Corynebacterium sp. KPL1998 [AXLO]
7299
7226
-
Lys
TTT
[ENA]
¡û
>W141155123
AXLS01000002
Actinomycetota
Corynebacterium sp. KPL1986 [AXLS]
838046
837973
-
Lys
TTT
[ENA]
¡û
>W141155263
AXLV01000003
Actinomycetota
Corynebacterium sp. KPL1857 [AXLV]
154047
154122
+
Lys
TTT
[ENA]
¡û
>W141155297
AXLW01000001
Actinomycetota
Corynebacterium sp. KPL1856 [AXLW]
5997
5922
-
Lys
TTT
[ENA]
¡û
>W141155638
AXMC01000015
Actinomycetota
Corynebacterium sp. KPL1814 [AXMC]
18101
18026
-
Lys
TTT
[ENA]
¡û
>WENV182623760
OJKN01001908
[OJKN] metagenome; surface
315
242
-
Lys
TTT
[ENA]
¢þ
>WENV182629241
OJKR01055025
[OJKR] metagenome; surface
51
125
+
Lys
TTT
[ENA]
¢þ
>WENV182629333
OJKS01000069
[OJKS] metagenome; surface
22613
22686
+
Lys
TTT
[ENA]
¢þ
>WENV182629566
OJKT01000323
[OJKT] metagenome; surface
639
566
-
Lys
TTT
[ENA]
¢þ
>WENV182636267
OJKZ01001808
[OJKZ] metagenome; surface
5924
5998
+
Lys
TTT
[ENA]
¢þ
>WENV182636338
OJKZ01003754
[OJKZ] metagenome; surface
3407
3480
+
Lys
TTT
[ENA]
¢þ
>WENV182641850
OJLK01003408
[OJLK] metagenome; surface
600
674
+
Lys
TTT
[ENA]
¢þ
>WENV182642731
OJLP01000047
[OJLP] metagenome; surface
13901
13974
+
Lys
TTT
[ENA]
¢þ
>WENV182671792
OJNM01002848
[OJNM] metagenome; surface
1100
1026
-
Lys
TTT
[ENA]
¢þ
>WENV182812183
OJXQ01002764
[OJXQ] human gut metagenome; human gut
407
480
+
Lys
TTT
[ENA]
¢þ
>WENV182829067
OKDM01000018
[OKDM] human gut metagenome; human gut
99018
99091
+
Lys
TTT
[ENA]
¢þ
>WENV182830986
OKEC01000901
[OKEC] human gut metagenome; human gut
690
617
-
Lys
TTT
[ENA]
¢þ
>WENV183510496
OMHO01005850
[OMHO] human oral metagenome; human oral
468
395
-
Lys
TTT
[ENA]
¢þ
>C181003331
AP017895
Actinomycetota
Rothia aeria JCM 11412 [AP017895]
659690
659763
+
Lys
TTT
-
¡û
>C181143836
CP026947
Actinomycetota
Corynebacterium yudongzhengii 2183 [CP026947]
2084250
2084175
-
Lys
TTT
-
¡û
>C191210958
LR134408
Actinomycetota
Corynebacterium segmentosum NCTC934 [LR134408]
1949586
1949513
-
Lys
TTT
-
¡û
>C191211691
LR134479
Actinomycetota
Rothia aeria NCTC10207 [LR134479]
221977
222050
+
Lys
TTT
-
¡û
>W1910182645
BJNB01000033
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
26220
26295
+
Lys
TTT
[ENA]
¡û
>W1910871035
NCWU01000016
Actinomycetota
Rothia dentocariosa OG2-1 [NCWU]
51951
52024
+
Lys
TTT
[ENA]
¡û
>W1910872211
NDFM01000006
Actinomycetota
Rothia sp. Olga [NDFM]
167150
167223
+
Lys
TTT
[ENA]
¡û
>W1810187521
PKHQ01000007
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
149965
150039
+
Lys
TTT
[ENA]
¡û
>W1810187560
PKHR01000003
Actinomycetota
Corynebacterium aurimucosum UMB0043 [PKHR]
5727
5654
-
Lys
TTT
[ENA]
¡û
>W10119270
ADVO01000005
Actinomycetota
Rothia dentocariosa ATCC 17931 [ADVO]
2466
2393
-
Lys
TTT
[ENA]
¡û
>W10127221
AEED01000134
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
5954
5881
-
Lys
TTT
[ENA]
¡û
>C11118554
CP002280
Actinomycetota
Rothia dentocariosa ATCC 17931 [CP002280]
744712
744639
-
Lys
TTT
[Ensembl]
¡û
>W11125490
ADVO01000005
Actinomycetota
Rothia dentocariosa ATCC 17931 [ADVO]
2466
2393
-
Lys
TTT
[ENA]
¡û
>W1511460858
JVLW01000037
Actinomycetota
Rothia dentocariosa 316_RDEN [JVLW]
55292
55219
-
Lys
TTT
[ENA]
¡û
>W1511471253
JVXS01000088
Actinomycetota
Rothia dentocariosa 1233_RDEN [JVXS]
8839
8766
-
Lys
TTT
[ENA]
¡û
>W11134709
AEED01000134
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
5954
5881
-
Lys
TTT
[ENA]
¡û
>W121062791
AJJQ01000036
Actinomycetota
Rothia aeria F0474 [AJJQ]
203376
203449
+
Lys
TTT
[ENA]
¡û
>W1710598782
FTOF01000004
Actinomycetota
Corynebacterium appendicis CIP 107643 [FTOF]
12629
12554
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK