This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.313277 (71 seq.)
>W1711092531
LTEE01000042
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
3517
3442
-
Lys
CTT
[ENA]
¡û
>W1711093848
LTFJ01000012
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
39958
40033
+
Lys
CTT
[ENA]
¡û
>W1711096308
LTHQ01000023
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
28307
28382
+
Lys
CTT
[ENA]
¡û
>W1711098587
LTJR01000032
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
49280
49205
-
Lys
CTT
[ENA]
¡û
>W1711102311
LTNQ01000010
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
108041
108116
+
Lys
CTT
[ENA]
¡û
>W1711102373
LTNR01000039
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
21826
21751
-
Lys
CTT
[ENA]
¡û
>W1711102544
LTNU01000061
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
6025
6100
+
Lys
CTT
[ENA]
¡û
>W1711102566
LTNV01000018
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
175
100
-
Lys
CTT
[ENA]
¡û
>W1711103454
LTOS01000034
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
6018
6093
+
Lys
CTT
[ENA]
¡û
>W1711106993
LTSJ01000011
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
93773
93698
-
Lys
CTT
[ENA]
¡û
>W1711110050
LTVE01000012
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
39033
38958
-
Lys
CTT
[ENA]
¡û
>W1711113440
LTYH01000020
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
35319
35394
+
Lys
CTT
[ENA]
¡û
>W1711114815
LTZP01000115
Actinomycetota
Corynebacterium sp. HMSC11E11 [LTZP]
3703
3776
+
Lys
CTT
[ENA]
¡û
>W1711187901
LWPW01000081
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
28325
28400
+
Lys
CTT
[ENA]
¡û
>W1711492307
MKKH01000008
Actinomycetota
Cellulosimicrobium sp. CUA-896 [MKKH]
8080
8005
-
Lys
CTT
[ENA]
¡û
>W1711503134
MKTI01000009
Actinomycetota
Cellulomonas sp. 73-145 [MKTI]
184191
184266
+
Lys
CTT
[ENA]
¡û
>W1711724043
MTPT01000073
Actinomycetota
Corynebacterium amycolatum [MTPT]
418
343
-
Lys
CTT
[ENA]
¡û
>W131098838
AOSG01000066
Actinomycetota
Thermobifida fusca TM51 [AOSG]
33274
33199
-
Lys
CTT
[ENA]
¡û
>W131098839
AOSG01000066
Actinomycetota
Thermobifida fusca TM51 [AOSG]
31378
31303
-
Lys
CTT
[ENA]
¡û
>W131158728
AQUL01000001
Actinomycetota
Amycolatopsis methanolica 239 [AQUL]
3425838
3425911
+
Lys
CTT
[ENA]
¡û
>WENV180984355
ODVG01000035
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
11650
11723
+
Lys
CTT
[ENA]
¢þ
>WENV181131624
OEGD01000038
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
14233
14160
-
Lys
CTT
[ENA]
¢þ
>WENV181308014
OFIS01000109
[OFIS] sludge metagenome; sludge
22838
22911
+
Lys
CTT
[ENA]
¢þ
>WENV181326382
OFLL01000216
[OFLL] metagenome; faeces
5303
5230
-
Lys
CTT
[ENA]
¢þ
>WENV181379091
OFRC01021203
[OFRC] wastewater metagenome; Exp Tend CN 10WW
523
448
-
Lys
CTT
[ENA]
¢þ
>W141169680
AXWO01000035
Actinomycetota
Glycomyces arizonensis DSM 44726 [AXWO]
2203
2278
+
Lys
CTT
[ENA]
¡û
>WENV181818485
OGTS01004920
[OGTS] human gut metagenome; fecal sample 4 from infant 4
214
288
+
Lys
CTT
[ENA]
¢þ
>WENV182628922
OJKR01000035
[OJKR] metagenome; surface
18332
18405
+
Lys
CTT
[ENA]
¢þ
>WENV182635989
OJKZ01000073
[OJKZ] metagenome; surface
28854
28781
-
Lys
CTT
[ENA]
¢þ
>WENV182640125
OJLB01000359
[OJLB] metagenome; surface
748
675
-
Lys
CTT
[ENA]
¢þ
>WENV182641877
OJLK01005914
[OJLK] metagenome; surface
32
105
+
Lys
CTT
[ENA]
¢þ
>WENV182643409
OJLU01007315
[OJLU] metagenome; surface
837
910
+
Lys
CTT
[ENA]
¢þ
>WENV182671814
OJNM01003607
[OJNM] metagenome; surface
1780
1707
-
Lys
CTT
[ENA]
¢þ
>WENV182820787
OKAP01000137
[OKAP] human gut metagenome; human gut
5058
5131
+
Lys
CTT
[ENA]
¢þ
>WENV182837554
OKGJ01000150
[OKGJ] human gut metagenome; human gut
320
393
+
Lys
CTT
[ENA]
¢þ
>WENV182843034
OKIJ01001151
[OKIJ] human gut metagenome; human gut
1167
1241
+
Lys
CTT
[ENA]
¢þ
>WENV182844864
OKIX01004539
[OKIX] human gut metagenome; human gut
509
435
-
Lys
CTT
[ENA]
¢þ
>C181081545
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
1157367
1157294
-
Lys
CTT
-
¡û
>C191064816
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
1156939
1156866
-
Lys
CTT
-
¡û
>W09108159
ABTA01000076
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
4661
4734
+
Lys
CTT
[ENA]
¡û
>W09114648
ABZU01000010
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
34100
34173
+
Lys
CTT
[ENA]
¡û
>W141757643
JNYA01002714
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
1115
1042
-
Lys
CTT
[ENA]
¡û
>W141758599
JNYS01000176
Actinomycetota
Glycomyces tenuis [JNYS]
1581
1654
+
Lys
CTT
[ENA]
¡û
>W1910179093
BJFL01000053
Actinomycetota
Gandjariella thermophila UICC B-83 SL3-2-4 [BJFL]
4280
4206
-
Lys
CTT
[ENA]
¡û
>W1910568609
JEMR01000029
Actinomycetota
Thermobifida fusca GAFM-TF-ZOO [JEMR]
35934
36009
+
Lys
CTT
[ENA]
¡û
>W1910568610
JEMR01000029
Actinomycetota
Thermobifida fusca GAFM-TF-ZOO [JEMR]
37834
37909
+
Lys
CTT
[ENA]
¡û
>C09100656
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
1171019
1170946
-
Lys
CTT
[Ensembl]
¡û
>C09103346
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
1660483
1660408
-
Lys
CTT
[Ensembl]
¡û
>W1911075181
NMUK01000054
Actinomycetota
Amycolatopsis sp. KNN50.9b [NMUK]
100852
100779
-
Lys
CTT
[ENA]
¡û
>W1810187606
PKHS01000003
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
339520
339447
-
Lys
CTT
[ENA]
¡û
>W1810187687
PKHT01000026
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
306
233
-
Lys
CTT
[ENA]
¡û
>W1810254752
PQHW01000004
Actinomycetota
Amycolatopsis thermalba NRRL B-24845 [PQHW]
103133
103206
+
Lys
CTT
[ENA]
¡û
>W1810254873
PQHY01000027
Actinomycetota
Amycolatopsis ruanii 49.3e [PQHY]
21746
21673
-
Lys
CTT
[ENA]
¡û
>W1810356915
PVNH01000003
Actinomycetota
Prauserella shujinwangii CGMCC 4.7125 [PVNH]
430168
430093
-
Lys
CTT
[ENA]
¡û
>W1810861795
QTUC01000001
Actinomycetota
Thermasporomyces composti DSM 22891 [QTUC]
3553180
3553107
-
Lys
CTT
[ENA]
¡û
>C151044218
CP009110
Actinomycetota
Amycolatopsis methanolica 239 [CP009110]
5731707
5731780
+
Lys
CTT
[Ensembl]
¡û
>W1511351384
JRNE01000081
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
43956
44031
+
Lys
CTT
[ENA]
¡û
>W1511457797
JVIP01000016
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
1544
1469
-
Lys
CTT
[ENA]
¡û
>W1511464313
JVPT01000049
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
27247
27322
+
Lys
CTT
[ENA]
¡û
>W1511476439
JWEP01000067
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
186
111
-
Lys
CTT
[ENA]
¡û
>W1511523824
JYCR01000003
Actinomycetota
Corynebacterium kroppenstedtii ITA105 [JYCR]
292957
292882
-
Lys
CTT
[ENA]
¡û
>W1511523940
JYDD01000001
Actinomycetota
Corynebacterium kroppenstedtii ITA205 [JYDD]
655316
655391
+
Lys
CTT
[ENA]
¡û
>W1511697767
LGED01000269
Actinomycetota
Saccharothrix sp. NRRL B-16348 [LGED]
296808
296883
+
Lys
CTT
[ENA]
¡û
>W11176375
AFWY01000011
Actinomycetota
Amycolatopsis sp. ATCC 39116 [AFWY]
1750971
1750898
-
Lys
CTT
[ENA]
¡û
>W11181212
AGIU01000047
Actinomycetota
Saccharomonospora azurea NA-128 [AGIU]
2160
2087
-
Lys
CTT
[ENA]
¡û
>W121010591
AGJI02000008
Actinomycetota
Saccharomonospora glauca K62 [AGJI]
419621
419694
+
Lys
CTT
[ENA]
¡û
>W121036307
AHLY01000003
Actinomycetota
Saccharomonospora cyanea NA-134 [AHLY]
2060186
2060259
+
Lys
CTT
[ENA]
¡û
>W1610633405
LIQR01000389
Actinomycetota
Peterkaempfera griseoplana griseoplanus [LIQR]
1500
1573
+
Lys
CTT
[ENA]
¡û
>W1710513439
FNAD01000015
Actinomycetota
Glycomyces harbinensis [FNAD]
2183
2258
+
Lys
CTT
[ENA]
¡û
>W1710572494
FOWS01000003
Actinomycetota
Saccharomonospora viridis [FOWS]
362077
362004
-
Lys
CTT
[ENA]
¡û
>W1710767837
LIQR01000389
Actinomycetota
Peterkaempfera griseoplana griseoplanus [LIQR]
1500
1573
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK