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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.313386 (8 seq.)
>W1711408559
MGMU01000107
Chloroflexota
Chloroflexi bacterium RBG_13_52_12 [MGMU]
4479
4407
-
Arg
CCG
[ENA]
¡û
>W1711408816
MGNJ01000038
Chloroflexota
Chloroflexi bacterium RBG_16_50_11 [MGNJ]
6141
6213
+
Arg
CCG
[ENA]
¡û
>WENV170659075
JXWO01000176
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
2128
2200
+
Arg
CCG
[ENA]
¡û
>C151081958
CP011392
Chloroflexota
Dehalogenimonas sp. WBC-2 [CP011392]
999997
999925
-
Arg
CCG
-
¡û
>SRA1035751
SRR035089.368256
454 Sequencing (SRP001810)
156
230
+
Arg
CCG
[SRA]
>C211116998
CP058566
Chloroflexota
Dehalogenimonas sp. GP [CP058566]
795183
795257
+
Arg
CCG
-
¡û
>W1610597160
LFDV01000002
Chloroflexota
Dehalogenimonas alkenigignens [LFDV]
1010079
1010151
+
Arg
CCG
[ENA]
¡û
>W1710718319
LFDV01000002
Chloroflexota
Dehalogenimonas alkenigignens [LFDV]
1010079
1010151
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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