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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.313652 (13 seq.)
>W1710806135
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
2154490
2154415
-
Thr
CGT
[ENA]
¡û
>WENV170419805
CEUM01137887
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5095
5170
+
Thr
CGT
[ENA]
¡û
>WENV170440019
CEUV01065131
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
830
755
-
Thr
CGT
[ENA]
¡û
>WENV170901737
MDTD01175114
[MDTD] marine metagenome; seawater
58590
58515
-
Thr
CGT
[ENA]
¡û
>C181226995
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
3796155
3796080
-
Thr
CGT
-
¡û
>W1911738020
QTZO01000006
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
169029
168954
-
Thr
CGT
[ENA]
¡û
>W2011303467
QTZO01000006
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
169029
168954
-
Thr
CGT
[ENA]
¡û
>W2012226855
WAIE01000004
Thermodesulfobacteriota
Desulfovibrio senegalensis DSM 101509 [WAIE]
323465
323390
-
Thr
CGT
[ENA]
¡û
>W2110515233
JAFMPN010000012
Thermodesulfobacteriota
Desulfovibrio sp. Huiquan2017 [JAFMPN]
25689
25614
-
Thr
CGT
[ENA]
¡û
>C231631057
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
983113
983038
-
Thr
CGT
-
¡û
>C241008577
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
3422509
3422434
-
Thr
CGT
-
¡û
>C241109017
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
2272284
2272209
-
Thr
CGT
-
¡û
>C131017918
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
1163204
1163279
+
Thr
CGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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