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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.314092 (76 seq.)
>W131166018
ARCB01000011
Bacillota
Streptococcus didelphis DSM 15616 [ARCB]
58814
58738
-
Arg
ACG
[ENA]
¡û
>W131166032
ARCC01000001
Bacillota
Streptococcus entericus DSM 14446 [ARCC]
142750
142677
-
Arg
ACG
[ENA]
¡û
>W131166159
ARCF01000011
Bacillota
Streptococcus merionis DSM 19192 [ARCF]
86728
86655
-
Arg
ACG
[ENA]
¡û
>W131166173
ARCF01000021
Bacillota
Streptococcus merionis DSM 19192 [ARCF]
13835
13762
-
Arg
ACG
[ENA]
¡û
>C171067224
CP017761
Bacillota
Marinilactibacillus sp. 15R [CP017761]
1403686
1403759
+
Arg
ACG
-
¡û
>C171067250
CP017761
Bacillota
Marinilactibacillus sp. 15R [CP017761]
436906
436833
-
Arg
ACG
-
¡û
>W141008839
AHAA01000001
Bacillota
Streptococcus urinalis FB127-CNA-2 [AHAA]
199214
199287
+
Arg
ACG
[ENA]
¡û
>W141008862
AHAA01000006
Bacillota
Streptococcus urinalis FB127-CNA-2 [AHAA]
302
375
+
Arg
ACG
[ENA]
¡û
>WENV180284255
OBID01023422
[OBID] metagenome; sludge
197
124
-
Arg
ACG
[ENA]
¡û
>WENV181199546
OERH01005539
[OERH] metagenome; water of meat washing
487
560
+
Arg
ACG
[ENA]
¡û
>WENV170655897
JTFN01092569
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
226
150
-
Arg
ACG
[ENA]
¡û
>WENV170658134
JTFP01058924
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
197
121
-
Arg
ACG
[ENA]
¡û
>WENV170727251
LTCX01001777
[LTCX] gut metagenome; intestine contents (feces)
390
317
-
Arg
ACG
[ENA]
¡û
>WENV170857609
MDTB01011158
[MDTB] marine metagenome; seawater
3254
3327
+
Arg
ACG
[ENA]
¡û
>C181224443
LT906439
Bacillota
Streptococcus merionis NCTC13788 [LT906439]
1628303
1628230
-
Arg
ACG
-
¡û
>C181224458
LT906439
Bacillota
Streptococcus merionis NCTC13788 [LT906439]
1468814
1468741
-
Arg
ACG
-
¡û
>C191206591
LR134323
Bacillota
Streptococcus urinalis NCTC13766 [LR134323]
871297
871370
+
Arg
ACG
-
¡û
>C191206605
LR134323
Bacillota
Streptococcus urinalis NCTC13766 [LR134323]
2103055
2102982
-
Arg
ACG
-
¡û
>C191206615
LR134323
Bacillota
Streptococcus urinalis NCTC13766 [LR134323]
2097192
2097119
-
Arg
ACG
-
¡û
>W1910378006
FUKW01000009
Bacillota
Marinilactibacillus psychrotolerans 42ea [FUKW]
226
299
+
Arg
ACG
[ENA]
¡û
>W1910439796
FWDP01000003
Bacillota
Marinilactibacillus piezotolerans Marseille-P2378 [FWDP]
412689
412762
+
Arg
ACG
[ENA]
¡û
>W1910439821
FWDP01000004
Bacillota
Marinilactibacillus piezotolerans Marseille-P2378 [FWDP]
985
1058
+
Arg
ACG
[ENA]
¡û
>W2010100006
BJUY01000060
Bacillota
Alkalibacterium kapii NBRC 103247 [BJUY]
353
280
-
Arg
ACG
[ENA]
¡û
>W2010103919
BJYC01000044
Bacillota
Alkalibacterium pelagium NBRC 103242 [BJYC]
735
661
-
Arg
ACG
[ENA]
¡û
>W2010317282
CACRSE010000054
Bacillota
Streptococcus sp. S784/96/1 [CACRSE]
1248
1175
-
Arg
ACG
[ENA]
¡û
>W2010325703
CACVCA010000090
Bacillota
Streptococcus sp. S784/96/1 [CACVCA]
4020
3947
-
Arg
ACG
[ENA]
¡û
>W2010325745
CACVCB010000083
Bacillota
Streptococcus sp. S784/96/1 [CACVCB]
1197
1124
-
Arg
ACG
[ENA]
¡û
>W2010325782
CACVCC010000065
Bacillota
Streptococcus sp. S784/96/1 [CACVCC]
142
215
+
Arg
ACG
[ENA]
¡û
>W2010325825
CACVCD010000062
Bacillota
Streptococcus sp. S784/96/1 [CACVCD]
1197
1124
-
Arg
ACG
[ENA]
¡û
>W2010402843
FUKW01000009
Bacillota
Marinilactibacillus psychrotolerans 42ea [FUKW]
226
299
+
Arg
ACG
[ENA]
¡û
>W2010404919
FWDP01000003
Bacillota
Marinilactibacillus piezotolerans Marseille-P2378 [FWDP]
412689
412762
+
Arg
ACG
[ENA]
¡û
>W2010404944
FWDP01000004
Bacillota
Marinilactibacillus piezotolerans Marseille-P2378 [FWDP]
985
1058
+
Arg
ACG
[ENA]
¡û
>W2010581168
JAAXPR010000028
Bacillota
Streptococcus ovuberis CCUG 69612 [JAAXPR]
767
840
+
Arg
ACG
[ENA]
¡û
>W2011403857
RCVM01000017
Bacillota
Streptococcus sp. 28462 [RCVM]
182
255
+
Arg
ACG
[ENA]
¡û
>W2011403877
RCVM01000078
Bacillota
Streptococcus sp. 28462 [RCVM]
139
214
+
Arg
ACG
[ENA]
¡û
>W2011579404
SHGT01000090
Bacillota
Streptococcus parasuis 4253 [SHGT]
873
946
+
Arg
ACG
[ENA]
¡û
>W2011965801
VBTE01000056
Bacillota
Marinilactibacillus psychrotolerans FAM 24235 [VBTE]
2220
2147
-
Arg
ACG
[ENA]
¡û
>W2011965831
VBTE01000064
Bacillota
Marinilactibacillus psychrotolerans FAM 24235 [VBTE]
298
371
+
Arg
ACG
[ENA]
¡û
>W2110015292
BKBH01000096
Bacillota
Marinilactibacillus psychrotolerans B7-9-5 [BKBH]
1778
1705
-
Arg
ACG
[ENA]
¡û
>W2110015328
BKBI01000020
Bacillota
Marinilactibacillus psychrotolerans M13-2T [BKBI]
2219
2146
-
Arg
ACG
[ENA]
¡û
>W2110015350
BKBI01000027
Bacillota
Marinilactibacillus psychrotolerans M13-2T [BKBI]
298
371
+
Arg
ACG
[ENA]
¡û
>W2110132544
CAKAKH010000001
Bacillota
Marinilactibacillus sp. Marseille-P9653 [CAKAKH]
918252
918325
+
Arg
ACG
[ENA]
¡û
>W2110132575
CAKAKH010000001
Bacillota
Marinilactibacillus sp. Marseille-P9653 [CAKAKH]
9402
9329
-
Arg
ACG
[ENA]
¡û
>W2110454398
JAETXU010000006
Bacillota
Streptococcus parasuis BS27 [JAETXU]
137843
137770
-
Arg
ACG
[ENA]
¡û
>W2110535772
JAGFVM010000013
Bacillota
Marinilactibacillus sp. M4U5P12 [JAGFVM]
47452
47379
-
Arg
ACG
[ENA]
¡û
>W2110535809
JAGFVM010000044
Bacillota
Marinilactibacillus sp. M4U5P12 [JAGFVM]
1825
1752
-
Arg
ACG
[ENA]
¡û
>C211199829
CP065054
Bacillota
Streptococcus equi subsp. zooepidemicus SEZ13 [CP065054]
23725
23798
+
Arg
ACG
-
¡û
>C211255924
CP069079
Bacillota
Streptococcus parasuis BS26 [CP069079]
23569
23642
+
Arg
ACG
-
¡û
>C211255946
CP069079
Bacillota
Streptococcus parasuis BS26 [CP069079]
312067
312140
+
Arg
ACG
-
¡û
>C211349279
CP076721
Bacillota
Streptococcus parasuis H35 [CP076721]
1285424
1285351
-
Arg
ACG
-
¡û
>C211349302
CP076721
Bacillota
Streptococcus parasuis H35 [CP076721]
944385
944312
-
Arg
ACG
-
¡û
>C231004272
AP024276
Bacillota
Streptococcus parasuis SUT-286 [AP024276]
29977
30050
+
Arg
ACG
-
¡û
>C231004328
AP024277
Bacillota
Streptococcus parasuis SUT-380 [AP024277]
22276
22349
+
Arg
ACG
-
¡û
>C231040991
CP031970
Bacillota
Streptococcus suis SFJ44 [CP031970]
22647
22720
+
Arg
ACG
-
¡û
>C231041013
CP031970
Bacillota
Streptococcus suis SFJ44 [CP031970]
326985
327058
+
Arg
ACG
-
¡û
>C231131561
CP073632
Bacillota
Streptococcus parasuis NN1 [CP073632]
23430
23503
+
Arg
ACG
-
¡û
>C231131583
CP073632
Bacillota
Streptococcus parasuis NN1 [CP073632]
311734
311807
+
Arg
ACG
-
¡û
>C231232441
CP086728
Bacillota
Streptococcus parasuis SS20 [CP086728]
22674
22747
+
Arg
ACG
-
¡û
>C231232463
CP086728
Bacillota
Streptococcus parasuis SS20 [CP086728]
331701
331774
+
Arg
ACG
-
¡û
>C231278376
CP090522
Bacillota
Streptococcus parasuis SS17 [CP090522]
22674
22747
+
Arg
ACG
-
¡û
>C231278398
CP090522
Bacillota
Streptococcus parasuis SS17 [CP090522]
331701
331774
+
Arg
ACG
-
¡û
>C231458051
CP102747
Bacillota
Streptococcus parasuis SFJ45 [CP102747]
22694
22767
+
Arg
ACG
-
¡û
>C231458073
CP102747
Bacillota
Streptococcus parasuis SFJ45 [CP102747]
334710
334783
+
Arg
ACG
-
¡û
>W2130000696
BKBH01000037
Bacillota
Marinilactibacillus psychrotolerans B7-9-5 [BKBH]
2220
2147
-
Arg
ACG
[ENA]
¡û
>C241235212
CP118733
Bacillota
Streptococcus sp. 29896 [CP118733]
22294
22367
+
Arg
ACG
-
¡û
>C241235257
CP118733
Bacillota
Streptococcus sp. 29896 [CP118733]
1677103
1677030
-
Arg
ACG
-
¡û
>C241338961
CP137602
Bacillota
Streptococcus parasuis 221006 [CP137602]
22394
22467
+
Arg
ACG
-
¡û
>C241338983
CP137602
Bacillota
Streptococcus parasuis 221006 [CP137602]
308102
308175
+
Arg
ACG
-
¡û
>W2310011722
BOJH01000001
Bacillota
Streptococcus parasuis SUT-328 [BOJH]
22277
22350
+
Arg
ACG
[ENA]
¡û
>W2310011744
BOJH01000001
Bacillota
Streptococcus parasuis SUT-328 [BOJH]
358892
358965
+
Arg
ACG
[ENA]
¡û
>W1510562953
CTEN01000008
Bacillota
Streptococcus varani FF10 [CTEN]
51312
51239
-
Arg
ACG
[ENA]
¡û
>W1511442236
JURJ01000044
Bacillota
Streptococcus anginosus 83_SANG [JURJ]
79
6
-
Arg
ACG
[ENA]
¡û
>W11149794
AEUZ01000002
Bacillota
Streptococcus urinalis 2285-97 [AEUZ]
45055
44982
-
Arg
ACG
[ENA]
¡û
>W11149826
AEUZ01000004
Bacillota
Streptococcus urinalis 2285-97 [AEUZ]
733289
733216
-
Arg
ACG
[ENA]
¡û
>W1710542074
FNYW01000020
Bacillota
Alkalibacterium gilvum [FNYW]
93
20
-
Arg
ACG
[ENA]
¡û
>W1710566982
FOSJ01000057
Bacillota
Marinilactibacillus piezotolerans [FOSJ]
2489
2416
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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