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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.314717 (34 seq.)
>W1710893669
LNEZ01000070
Alphaproteobacteria
Rhizobiales bacterium Ga0077548 [LNEZ]
6434
6507
+
Ala
CGC
[ENA]
¡û
>W1711475572
MJUX01000005
Alphaproteobacteria
Acuticoccus yangtzensis [MJUX]
70359
70284
-
Ala
CGC
[ENA]
¡û
>W1712056279
NFZT01000001
Alphaproteobacteria
Pacificimonas flava [NFZT]
2668640
2668715
+
Ala
CGC
[ENA]
¡û
>W131166459
ARCM01000002
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
574326
574251
-
Ala
CGC
[ENA]
¡û
>W131175687
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
4504476
4504551
+
Ala
CGC
[ENA]
¡û
>WENV181166993
OEIU01005858
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
288
213
-
Ala
CGC
[ENA]
¡û
>WENV181413550
OGCK01086932
[OGCK] hot springs metagenome; hot spring sediment
182
255
+
Ala
CGC
[ENA]
¡û
>WENV183749624
PPFU01192697
[PPFU] hypolithon metagenome; Antarctic Hypolithon
403
476
+
Ala
CGC
[ENA]
¡û
>WENV170334374
CESY01167998
[CESY] marine metagenome genome assembly TARA_098_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
452
379
-
Ala
CGC
[ENA]
¡û
>WENV170956104
MJUM01008235
[MJUM] soil metagenome; viral particles from soil sample SP
184
111
-
Ala
CGC
[ENA]
¡û
>C191005684
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
3723599
3723524
-
Ala
CGC
-
¡û
>W1810489483
QBBV01000001
Alphaproteobacteria
Acuticoccus kandeliae J103 [QBBV]
911161
911236
+
Ala
CGC
[ENA]
¡û
>W2010731797
JACIJI010000004
Alphaproteobacteria
Stakelama sediminis DSM 27203 [JACIJI]
102943
103018
+
Ala
CGC
[ENA]
¡û
>W2011496739
RXIO01000027
Alphaproteobacteria
Ancylobacter aquaticus UV5 [RXIO]
70226
70301
+
Ala
CGC
[ENA]
¡û
>W2011506141
RYFI01000010
Alphaproteobacteria
Hansschlegelia zhihuaiae S 113 [RYFI]
37659
37734
+
Ala
CGC
[ENA]
¡û
>W2012088620
VMBP01000001
Alphaproteobacteria
Starkeya sp. 3C [VMBP]
66058
65983
-
Ala
CGC
[ENA]
¡û
>W2012197337
VWPL01000002
Alphaproteobacteria
Blastochloris sulfoviridis DSM 729 [VWPL]
37937
37862
-
Ala
CGC
[ENA]
¡û
>W2110019133
BMCP01000001
Alphaproteobacteria
Agaricicola taiwanensis CCM 7684 [BMCP]
142429
142504
+
Ala
CGC
[ENA]
¡û
>W2110567539
JAGRQC010000004
Alphaproteobacteria
Sphingomonadaceae bacterium LXI357 [JAGRQC]
270622
270697
+
Ala
CGC
[ENA]
¡û
>W2110593064
JAHCQH010000012
Alphaproteobacteria
Ancylobacter sp. VKM B-3255 [JAHCQH]
65779
65704
-
Ala
CGC
[ENA]
¡û
>C201154090
CP045144
Alphaproteobacteria
Ancylobacter sp. TS-1 [CP045144]
2296158
2296083
-
Ala
CGC
-
¡û
>C211134414
CP060494
Alphaproteobacteria
Sphingosinithalassobacter sp. CS137 [CP060494]
1260440
1260365
-
Ala
CGC
-
¡û
>W2110707320
JAIWKD010000004
Alphaproteobacteria
Acuticoccus sediminis DP8Y115-3 [JAIWKD]
686464
686539
+
Ala
CGC
[ENA]
¡û
>C211388846
CP081869
Alphaproteobacteria
Chenggangzhangella methanolivorans CHL1 [CP081869]
2378347
2378272
-
Ala
CGC
-
¡û
>C231179877
CP083239
Alphaproteobacteria
Ancylobacter polymorphus ZM13 [CP083239]
1682656
1682731
+
Ala
CGC
-
¡û
>C241131989
CP048834
Alphaproteobacteria
Starkeya sp. ORNL1 [CP048834]
4732819
4732894
+
Ala
CGC
-
¡û
>C241133194
CP049109
Alphaproteobacteria
Sphingosinithalassobacter tenebrarum zrk23 [CP049109]
1277429
1277504
+
Ala
CGC
-
¡û
>W2310022876
BSFK01000007
Alphaproteobacteria
Methylopila jiangsuensis VKM B-2555 [BSFK]
40520
40445
-
Ala
CGC
[ENA]
¡û
>W2310022934
BSFL01000005
Alphaproteobacteria
Methylopila turkensis VKM B-2748 [BSFL]
24985
25060
+
Ala
CGC
[ENA]
¡û
>W2310022959
BSFM01000011
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [BSFM]
334591
334516
-
Ala
CGC
[ENA]
¡û
>C161001666
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
1679397
1679322
-
Ala
CGC
[Ensembl]
¡û
>C161048016
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
3341103
3341178
+
Ala
CGC
-
¡û
>W1610753935
LNEZ01000070
Alphaproteobacteria
Rhizobiales bacterium Ga0077548 [LNEZ]
6434
6507
+
Ala
CGC
[ENA]
¡û
>W1710532630
FNQM01000003
Alphaproteobacteria
Rubrimonas cliftonensis [FNQM]
186771
186696
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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