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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.314780 (22 seq.)
>W1711342441
MCHF01000012
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
24634
24709
+
Thr
TGT
[ENA]
¡û
>W131162518
AQYY01000004
Bacillota
Dehalobacter sp. FTH1 [AQYY]
268935
268860
-
Thr
TGT
[ENA]
¡û
>WENV180455555
OBXO01009400
[OBXO] human gut metagenome; faeces
105
33
-
Thr
TGT
[ENA]
¢þ
>W141088275
AUUR01000025
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
75303
75228
-
Thr
TGT
[ENA]
¡û
>W141246552
CANE01000005
Bacillota
Dehalobacter restrictus E1 [CANE]
47321
47396
+
Thr
TGT
[ENA]
¡û
>W141246608
CANF01000026
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
47320
47395
+
Thr
TGT
[ENA]
¡û
>WENV170002854
AGTN01148194
[AGTN] bioreactor metagenome; poplar biomass
201
126
-
Thr
TGT
[ENA]
¢þ
>WENV170562557
CZCB01003555
[CZCB] anaerobic digester metagenome; anaerobic digester
10164
10239
+
Thr
TGT
[ENA]
¢þ
>WENV170659026
JXWO01000083
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
18177
18252
+
Thr
TGT
[ENA]
¢þ
>C141011731
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
480094
480169
+
Thr
TGT
[Ensembl]
¡û
>W1911608691
PNXX01000006
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
30383
30458
+
Thr
TGT
[ENA]
¡û
>W1911613564
POSF01000019
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
154428
154353
-
Thr
TGT
[ENA]
¡û
>C10113239
CP002028
Bacillota
Thermincola potens JR [CP002028]
296316
296391
+
Thr
TGT
[Ensembl]
¡û
>C11107318
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
285363
285438
+
Thr
TGT
[Ensembl]
¡û
>W1511430096
JUEF01000083
Bacillota
Peptococcaceae bacterium BICA1-8 [JUEF]
142
217
+
Thr
TGT
[ENA]
¡û
>W1511564458
LADT01000013
Bacillota
Clostridiaceae bacterium BRH_c20a [LADT]
110927
110852
-
Thr
TGT
[ENA]
¡û
>W1511564473
LADT01000016
Bacillota
Clostridiaceae bacterium BRH_c20a [LADT]
163433
163358
-
Thr
TGT
[ENA]
¡û
>W11150403
AEVP01000038
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
732
657
-
Thr
TGT
[ENA]
¡û
>W1511706123
LGTE01000012
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
89502
89427
-
Thr
TGT
[ENA]
¡û
>C131008555
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
1920121
1920046
-
Thr
TGT
[Ensembl]
¡û
>C131008606
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
1949900
1949825
-
Thr
TGT
[Ensembl]
¡û
>W1710590083
FRAR01000037
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
21712
21787
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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