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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.314786 (78 seq.)
>W1711276570
LZIG01000024
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
55016
54943
-
Glu
CTC
[ENA]
¡û
>W1711276613
LZIG01000341
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
1486
1411
-
Glu
CTC
[ENA]
¡û
>W1711491741
MKJV01000070
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
96053
96126
+
Glu
CTC
[ENA]
¡û
>W1711539273
MLYX02000004
Actinomycetota
Rhodococcus sp. M8 [MLYX]
471607
471532
-
Glu
CTC
[ENA]
¡û
>W1711539274
MLYX02000004
Actinomycetota
Rhodococcus sp. M8 [MLYX]
471472
471397
-
Glu
CTC
[ENA]
¡û
>W1711694635
MSIE01000005
Actinomycetota
Actinophytocola xanthii 11-183 [MSIE]
28094
28021
-
Glu
CTC
[ENA]
¡û
>W1711724917
MTQO01000054
Actinomycetota
Actinosynnema sp. ALI-1.44 [MTQO]
85323
85396
+
Glu
CTC
[ENA]
¡û
>C171045487
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
6106416
6106343
-
Glu
CTC
-
¡û
>C171045534
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
6204730
6204657
-
Glu
CTC
-
¡û
>W131059059
ANGC01000008
Actinomycetota
Rhodococcus ruber Chol-4 [ANGC]
14935
15010
+
Glu
CTC
[ENA]
¡û
>W131059060
ANGC01000008
Actinomycetota
Rhodococcus ruber Chol-4 [ANGC]
15070
15145
+
Glu
CTC
[ENA]
¡û
>W131161785
AQXZ01000019
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 [AQXZ]
140433
140358
-
Glu
CTC
[ENA]
¡û
>W131251240
CAVJ010000065
Actinomycetota
Rhodococcus aetherivorans EsD8 [CAVJ]
13022
13097
+
Glu
CTC
[ENA]
¡û
>W131251241
CAVJ010000065
Actinomycetota
Rhodococcus aetherivorans EsD8 [CAVJ]
13157
13232
+
Glu
CTC
[ENA]
¡û
>WENV180343244
OBLK01000471
[OBLK] soil metagenome; Clay
2140
2213
+
Glu
CTC
[ENA]
¢þ
>W141092546
AVAE01000016
Actinomycetota
Rhodococcus aetherivorans BCP1 [AVAE]
200459
200384
-
Glu
CTC
[ENA]
¡û
>W141092547
AVAE01000016
Actinomycetota
Rhodococcus aetherivorans BCP1 [AVAE]
200324
200249
-
Glu
CTC
[ENA]
¡û
>WENV181163464
OEIQ01039553
[OEIQ] soil metagenome; soil
211
284
+
Glu
CTC
[ENA]
¢þ
>W141202605
AZHI01000003
Actinomycetota
Rhodococcus rhodochrous ATCC 21198 [AZHI]
17200
17125
-
Glu
CTC
[ENA]
¡û
>W141202606
AZHI01000003
Actinomycetota
Rhodococcus rhodochrous ATCC 21198 [AZHI]
17065
16990
-
Glu
CTC
[ENA]
¡û
>C181090283
CP023778
Actinomycetota
Nocardia terpenica NC_YFY_NT001 [CP023778]
8423922
8423849
-
Glu
CTC
-
¡û
>C181090293
CP023778
Actinomycetota
Nocardia terpenica NC_YFY_NT001 [CP023778]
6408609
6408536
-
Glu
CTC
-
¡û
>C181099317
CP024315
Actinomycetota
Rhodococcus ruber P14 [CP024315]
1316963
1316888
-
Glu
CTC
-
¡û
>W141754596
JNVU01000048
Actinomycetota
Saccharopolyspora rectivirgula [JNVU]
99368
99295
-
Glu
CTC
[ENA]
¡û
>W141758230
JNYM01000088
Actinomycetota
Kibdelosporangium aridum subsp. largum [JNYM]
1011
938
-
Glu
CTC
[ENA]
¡û
>W141759254
JNZF01000001
Actinomycetota
Nocardia carnea carneus [JNZF]
370244
370317
+
Glu
CTC
[ENA]
¡û
>W141766801
JOEF01000005
Actinomycetota
Allokutzneria albata [JOEF]
360633
360708
+
Glu
CTC
[ENA]
¡û
>W1910179082
BJFL01000026
Actinomycetota
Gandjariella thermophila UICC B-83 SL3-2-4 [BJFL]
60880
60807
-
Glu
CTC
[ENA]
¡û
>W1910584573
JXXO01000008
Actinomycetota
Rhodococcus ruber OA1 [JXXO]
24142
24217
+
Glu
CTC
[ENA]
¡û
>W1910584574
JXXO01000008
Actinomycetota
Rhodococcus ruber OA1 [JXXO]
24277
24352
+
Glu
CTC
[ENA]
¡û
>W1910897037
NGAF01000001
Actinomycetota
Nocardia cerradoensis CNM20130759 [NGAF]
619066
619139
+
Glu
CTC
[ENA]
¡û
>W1910897055
NGAF01000002
Actinomycetota
Nocardia cerradoensis CNM20130759 [NGAF]
54820
54747
-
Glu
CTC
[ENA]
¡û
>W1911814611
QZFT01000088
Actinomycetota
Pseudonocardiaceae bacterium YIM PH 21723 [QZFT]
4265
4338
+
Glu
CTC
[ENA]
¡û
>W1810282403
PSZA01000004
Actinomycetota
Nocardia nova MDA5529 [PSZA]
118058
118131
+
Glu
CTC
[ENA]
¡û
>W1810282424
PSZA01000021
Actinomycetota
Nocardia nova MDA5529 [PSZA]
51973
51900
-
Glu
CTC
[ENA]
¡û
>W1810282509
PSZC01000007
Actinomycetota
Nocardia nova MDA3139 [PSZC]
253820
253747
-
Glu
CTC
[ENA]
¡û
>W1810282528
PSZC01000035
Actinomycetota
Nocardia nova MDA3139 [PSZC]
20249
20176
-
Glu
CTC
[ENA]
¡û
>W1810282602
PSZE01000007
Actinomycetota
Nocardia nova MDA0897 [PSZE]
253866
253793
-
Glu
CTC
[ENA]
¡û
>W1810282627
PSZE01000038
Actinomycetota
Nocardia nova MDA0897 [PSZE]
20265
20192
-
Glu
CTC
[ENA]
¡û
>W1810608586
QGTL01000001
Actinomycetota
Nocardia neocaledoniensis DSM 44717 [QGTL]
820284
820211
-
Glu
CTC
[ENA]
¡û
>W1810608588
QGTL01000002
Actinomycetota
Nocardia neocaledoniensis DSM 44717 [QGTL]
159045
159119
+
Glu
CTC
[ENA]
¡û
>C151080816
CP011341
Actinomycetota
Rhodococcus aetherivorans IcdP1 [CP011341]
3618286
3618211
-
Glu
CTC
[Ensembl]
¡û
>C151080817
CP011341
Actinomycetota
Rhodococcus aetherivorans IcdP1 [CP011341]
3618151
3618076
-
Glu
CTC
[Ensembl]
¡û
>C11117074
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
1933601
1933676
+
Glu
CTC
[Ensembl]
¡û
>W121021598
AGVX02000120
Actinomycetota
Actinoalloteichus spitiensis RMV-1378 [AGVX]
21959
22032
+
Glu
CTC
[ENA]
¡û
>W121125489
BAGB01000054
Actinomycetota
Nocardia jiangxiensis NBRC 101359 [BAGB]
29686
29611
-
Glu
CTC
[ENA]
¡û
>W121125500
BAGB01000069
Actinomycetota
Nocardia jiangxiensis NBRC 101359 [BAGB]
42445
42372
-
Glu
CTC
[ENA]
¡û
>W121125596
BAGD01000050
Actinomycetota
Nocardia otitidiscaviarum NBRC 14405 [BAGD]
59306
59231
-
Glu
CTC
[ENA]
¡û
>W121125865
BAGI01001343
Actinomycetota
Nocardia terpenica NBRC 100888 [BAGI]
2316
2243
-
Glu
CTC
[ENA]
¡û
>W121125873
BAGI01001910
Actinomycetota
Nocardia terpenica NBRC 100888 [BAGI]
841
768
-
Glu
CTC
[ENA]
¡û
>W121125918
BAGJ01000127
Actinomycetota
Nocardia testacea NBRC 100365 [BAGJ]
40981
40908
-
Glu
CTC
[ENA]
¡û
>W121126027
BAGL01000063
Actinomycetota
Nocardia transvalensis NBRC 15921 [BAGL]
95957
95884
-
Glu
CTC
[ENA]
¡û
>W121126035
BAGL01000085
Actinomycetota
Nocardia transvalensis NBRC 15921 [BAGL]
35593
35520
-
Glu
CTC
[ENA]
¡û
>W121126073
BAGM01000094
Actinomycetota
Nocardia veterana NBRC 100344 [BAGM]
40866
40793
-
Glu
CTC
[ENA]
¡û
>W121126085
BAGM01000126
Actinomycetota
Nocardia veterana NBRC 100344 [BAGM]
46555
46480
-
Glu
CTC
[ENA]
¡û
>W1610051194
BBGP01002031
Actinomycetota
Pseudonocardia chloroethenivorans JCM 12679 [BBGP]
331
407
+
Glu
CTC
[ENA]
¡û
>W1610079283
BDBN01000042
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
58636
58709
+
Glu
CTC
[ENA]
¡û
>W1610079284
BDBN01000044
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
50313
50238
-
Glu
CTC
[ENA]
¡û
>W1610079429
BDBQ01000039
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
10685
10758
+
Glu
CTC
[ENA]
¡û
>W1610079459
BDBQ01000108
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
680
607
-
Glu
CTC
[ENA]
¡û
>W1610080297
BDCG01000011
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
78343
78270
-
Glu
CTC
[ENA]
¡û
>W1610080652
BDCN01000023
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
204042
203969
-
Glu
CTC
[ENA]
¡û
>W1610080669
BDCN01000039
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
51062
50987
-
Glu
CTC
[ENA]
¡û
>W1611035855
LZIG01000024
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
55016
54943
-
Glu
CTC
[ENA]
¡û
>W1611035898
LZIG01000341
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
1486
1411
-
Glu
CTC
[ENA]
¡û
>W1710047593
BBGP01002031
Actinomycetota
Pseudonocardia chloroethenivorans JCM 12679 [BBGP]
331
407
+
Glu
CTC
[ENA]
¡û
>W1710072180
BCXE01000011
Actinomycetota
Rhodococcus ruber NBRC 15591 [BCXE]
55843
55918
+
Glu
CTC
[ENA]
¡û
>W1710072181
BCXE01000011
Actinomycetota
Rhodococcus ruber NBRC 15591 [BCXE]
55978
56053
+
Glu
CTC
[ENA]
¡û
>W1710077842
BDBN01000042
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
58636
58709
+
Glu
CTC
[ENA]
¡û
>W1710077843
BDBN01000044
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
50313
50238
-
Glu
CTC
[ENA]
¡û
>W1710077988
BDBQ01000039
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
10685
10758
+
Glu
CTC
[ENA]
¡û
>W1710078018
BDBQ01000108
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
680
607
-
Glu
CTC
[ENA]
¡û
>W1710078856
BDCG01000011
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
78343
78270
-
Glu
CTC
[ENA]
¡û
>W1710079211
BDCN01000023
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
204042
203969
-
Glu
CTC
[ENA]
¡û
>W1710079228
BDCN01000039
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
51062
50987
-
Glu
CTC
[ENA]
¡û
>W1710518164
FNDV01000008
Actinomycetota
Actinokineospora alba album [FNDV]
16028
16101
+
Glu
CTC
[ENA]
¡û
>W1710589941
FRAP01000003
Actinomycetota
Pseudonocardia thermophila [FRAP]
372661
372734
+
Glu
CTC
[ENA]
¡û
>W1710606475
FWXV01000006
Actinomycetota
Kibdelosporangium aridum [FWXV]
482944
483017
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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