This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.314928 (43 seq.)
>W1710876051
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
673049
673124
+
Thr
CGT
[ENA]
¡û
>W1711135006
LUYL01000023
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
46243
46318
+
Thr
CGT
[ENA]
¡û
>W131230907
AUIA01000004
Actinomycetota
Propionicicella superfundia DSM 22317 [AUIA]
70315
70240
-
Thr
CGT
[ENA]
¡û
>W1711502626
MKSW01000012
Actinomycetota
Actinobacteria bacterium 69-20 [MKSW]
82957
83030
+
Thr
CGT
[ENA]
¡û
>WENV180030328
FTJM01000116
[FTJM] metagenome; soil
8416
8342
-
Thr
CGT
[ENA]
¡û
>WENV181402775
OFTY01043809
[OFTY] sludge metagenome; sludge
236
309
+
Thr
CGT
[ENA]
¡û
>W141241260
CAHD01000084
Actinomycetota
Cellulomonas massiliensis JC225 [CAHD]
3101
3176
+
Thr
CGT
[ENA]
¡û
>WENV183734946
PJUA01000211
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
17500
17573
+
Thr
CGT
[ENA]
¡û
>WENV183736311
PJUC01000554
[PJUC] soil metagenome; Soil enriched on filter paper
13581
13508
-
Thr
CGT
[ENA]
¡û
>WENV183736401
PJUC01001920
[PJUC] soil metagenome; Soil enriched on filter paper
3701
3774
+
Thr
CGT
[ENA]
¡û
>WENV183736577
PJUC01015050
[PJUC] soil metagenome; Soil enriched on filter paper
742
668
-
Thr
CGT
[ENA]
¡û
>WENV170551951
CXWJ01031417
[CXWJ] wastewater metagenome; activated sludge
8942
8867
-
Thr
CGT
[ENA]
¡û
>C181052410
CP021430
Actinomycetota
Cellulomonas sp. PSBB021 [CP021430]
3387925
3388000
+
Thr
CGT
-
¡û
>C191210041
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
531373
531448
+
Thr
CGT
-
¡û
>W1910129180
BHYL01000097
Actinomycetota
Cellulomonas sp. TKZ-21 [BHYL]
13614
13689
+
Thr
CGT
[ENA]
¡û
>W1910155465
BIMR01000022
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
16951
17026
+
Thr
CGT
[ENA]
¡û
>W1911768052
QXFN01000002
Actinomycetota
Cellulomonas sp. CPCC 204705 [QXFN]
92360
92433
+
Thr
CGT
[ENA]
¡û
>W1810365467
PVUE01000003
Actinomycetota
Antricoccus suffuscus DSM 100065 [PVUE]
212191
212265
+
Thr
CGT
[ENA]
¡û
>W2010081920
BHYL01000097
Actinomycetota
Cellulomonas sp. TKZ-21 [BHYL]
13614
13689
+
Thr
CGT
[ENA]
¡û
>W2010088400
BIMR01000022
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
16951
17026
+
Thr
CGT
[ENA]
¡û
>W2010094730
BJLP01000024
Actinomycetota
Cellulomonas uda NBRC 3747 [BJLP]
26049
25974
-
Thr
CGT
[ENA]
¡û
>W2010106453
BKAL01000008
Actinomycetota
Cellulomonas soli NBRC 109434 [BKAL]
241700
241625
-
Thr
CGT
[ENA]
¡û
>W2010269093
CABKRU020000001
Actinomycetota
Cellulomonas massiliensis [CABKRU]
1233990
1234064
+
Thr
CGT
[ENA]
¡û
>W2010580345
JAAXOY010000304
Actinomycetota
Cellulomonas septica ATCC BAA-787 [JAAXOY]
2649
2574
-
Thr
CGT
[ENA]
¡û
>W2010591911
JABELZ010000098
Actinomycetota
Cellulomonas fimi W7543 [JABELZ]
2519
2444
-
Thr
CGT
[ENA]
¡û
>W2010668245
JACBZJ010000001
Actinomycetota
Cellulomonas soli DSM 24484 [JACBZJ]
2240614
2240689
+
Thr
CGT
[ENA]
¡û
>W2011325574
QXFN01000002
Actinomycetota
Cellulomonas sp. CPCC 204705 [QXFN]
92360
92433
+
Thr
CGT
[ENA]
¡û
>W2011687621
SRZI01000032
Actinomycetota
Cellulomonas sp. Z29 [SRZI]
3464
3391
-
Thr
CGT
[ENA]
¡û
>W2110260959
JACSQV010000002
Actinomycetota
Cellulomonas sp. Sa3CUA2 [JACSQV]
311551
311478
-
Thr
CGT
[ENA]
¡û
>W2110290800
JACYUO010000001
Actinomycetota
Frigoribacterium sp. CFBP 8754 CFBP8754 [JACYUO]
402987
403061
+
Thr
CGT
[ENA]
¡û
>W2110499577
JAFIBR010000001
Actinomycetota
Frigoribacterium sp. PvP121 [JAFIBR]
1685272
1685346
+
Thr
CGT
[ENA]
¡û
>W2110532724
JAGFBO010000003
Actinomycetota
Cellulomonas sp. zg-ZUI157 [JAGFBO]
945881
945954
+
Thr
CGT
[ENA]
¡û
>W2110532779
JAGFBP010000009
Actinomycetota
Cellulomonas sp. zg-ZUI40 [JAGFBP]
135409
135482
+
Thr
CGT
[ENA]
¡û
>C201212563
CP048210
Actinomycetota
Cellulomonas sp. H30R-01 [CP048210]
4230740
4230815
+
Thr
CGT
-
¡û
>C211060488
CP043650
Actinomycetota
Frigoribacterium sp. NBH87 [CP043650]
2967831
2967905
+
Thr
CGT
-
¡û
>C211341329
CP076023
Actinomycetota
Cellulomonas sp. zg-ZUI157 [CP076023]
630007
630080
+
Thr
CGT
-
¡û
>W2110737200
JAJENF010000007
Actinomycetota
Cellulomonas sp. zg-B89 [JAJENF]
344218
344291
+
Thr
CGT
[ENA]
¡û
>C231537324
CP110806
Actinomycetota
Cellulomonas sp. S1-8 [CP110806]
688453
688526
+
Thr
CGT
-
¡û
>C241093769
CP045245
Actinomycetota
Cellulomonas sp. JZ18 [CP045245]
3531639
3531566
-
Thr
CGT
-
¡û
>C10103424
CP001964
Actinomycetota
Cellulomonas flavigena DSM 20109 [CP001964]
619218
619291
+
Thr
CGT
[Ensembl]
¡û
>C11105012
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
531459
531534
+
Thr
CGT
[Ensembl]
¡û
>W1610738397
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
673049
673124
+
Thr
CGT
[ENA]
¡û
>W1610946126
LUYL01000023
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
46243
46318
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK