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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315293 (36 seq.)
>W1711928618
NAFE01000216
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
35972
36047
+
Met
CAT
[ENA]
¡û
>W1711928820
NAFI01000180
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
35972
36047
+
Met
CAT
[ENA]
¡û
>W131159748
AQVT01000001
Alphaproteobacteria
Methylobacterium sp. 88A [AQVT]
2373028
2373103
+
Met
CAT
[ENA]
¡û
>C019138
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
3322281
3322206
-
Met
CAT
[Ensembl]
¡û
>C171037992
CP015367
Alphaproteobacteria
Methylobacterium phyllosphaerae CBMB27 [CP015367]
1071856
1071931
+
Met
CAT
-
¡û
>W141063831
APJH01000004
Alphaproteobacteria
Afipia sp. OHSU_II-C2 [APJH]
85343
85418
+
Met
CAT
[ENA]
¡û
>W141063915
APJI01000030
Alphaproteobacteria
Afipia sp. OHSU_II-C1 [APJI]
77848
77923
+
Met
CAT
[ENA]
¡û
>WENV180690049
OCZB010471693
[OCZB] metagenome; Oyster Gut Contents
195
120
-
Ile2
CAT
[ENA]
¡û
>WENV180694715
OCZS012596997
[OCZS] soil metagenome; soil
166
91
-
Ile2
CAT
[ENA]
¡û
>WENV181167196
OEIU01013310
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1
76
+
Ile2
CAT
[ENA]
¡û
>WENV181167261
OEIU01016388
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1643
1568
-
Ile2
CAT
[ENA]
¡û
>W141220424
AZXU01000002
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
959351
959276
-
Met
CAT
[ENA]
¡û
>W141223366
BADE01000584
Alphaproteobacteria
Methylobacterium sp. B34 [BADE]
17329
17254
-
Met
CAT
[ENA]
¡û
>W141223377
BADE01000782
Alphaproteobacteria
Methylobacterium sp. B34 [BADE]
6429
6504
+
Met
CAT
[ENA]
¡û
>C181155074
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
3520728
3520803
+
Met
CAT
-
¡û
>C191170888
CP039690
Alphaproteobacteria
Phreatobacter stygius KCTC 52518 [CP039690]
743679
743604
-
Met
CAT
-
¡û
>W09107196
ABFR01000009
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
12841
12766
-
Met
CAT
[ENA]
¡û
>C151099572
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
3816034
3816109
+
Met
CAT
[Ensembl]
¡û
>W2011623980
SLXY01000014
Alphaproteobacteria
Rhizobium sp. PP-CC-2G-626 [SLXY]
88351
88276
-
Ile2
CAT
[ENA]
¡û
>ENV09003210
ADGO01010888
Compost metagenome contig00001
324
249
-
Met
CAT
[ENA]
¡û
>C201116438
CP042823
Alphaproteobacteria
Methylobacterium sp. WL1 [CP042823]
1276937
1277012
+
Ile2
CAT
-
¡û
>C201134251
CP043538
Alphaproteobacteria
Methylobacterium mesophilicum SR1.6/6 [CP043538]
3598394
3598319
-
Ile2
CAT
-
¡û
>C211014988
AP024145
Alphaproteobacteria
Methylobacterium indicum VL1 [AP024145]
612459
612384
-
Ile2
CAT
-
¡û
>C211230427
CP066699
Alphaproteobacteria
Rhodopseudomonas palustris RCB100 [CP066699]
1813545
1813620
+
Ile2
CAT
-
¡û
>C211361154
CP077803
Alphaproteobacteria
Rhodospirillum rubrum DSM 467 [CP077803]
3322300
3322225
-
Ile2
CAT
-
¡û
>C231179906
CP083239
Alphaproteobacteria
Ancylobacter polymorphus ZM13 [CP083239]
2757127
2757052
-
Ile2
CAT
-
¡û
>C231324710
CP092848
Alphaproteobacteria
Methylobacterium organophilum WPA_B [CP092848]
662430
662505
+
Ile2
CAT
-
¡û
>C231532888
CP110389
Alphaproteobacteria
Rhodopseudomonas sp. P2A-2r [CP110389]
2409676
2409601
-
Ile2
CAT
-
¡û
>W10119574
ADVZ01000003
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
408618
408693
+
Met
CAT
[ENA]
¡û
>WENV11100392
AERA01002166
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
7689
7764
+
Met
CAT
[ENA]
¡û
>C11118769
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
4164305
4164230
-
Met
CAT
[Ensembl]
¡û
>C11118853
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
3322281
3322206
-
Met
CAT
[Ensembl]
¡û
>W11125840
ADVZ01000003
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
408618
408693
+
Met
CAT
[ENA]
¡û
>W121065354
AJPY01000464
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
574
499
-
Met
CAT
[ENA]
¡û
>W121081105
AKFK01000013
Alphaproteobacteria
Methylobacterium sp. GXF4 [AKFK]
31156
31081
-
Met
CAT
[ENA]
¡û
>W121081125
AKFK01000055
Alphaproteobacteria
Methylobacterium sp. GXF4 [AKFK]
95075
95000
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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