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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315345 (14 seq.)
>WENV170558647
CXWL01082502
[CXWL] groundwater metagenome; biofilm material
1370
1443
+
Arg
ACG
[ENA]
¡û
>C191092511
CP032630
Actinomycetota
Protaetiibacter intestinalis 2DFWR-13 [CP032630]
1481632
1481705
+
Arg
ACG
-
¡û
>C191143853
CP035491
Actinomycetota
Agromyces protaetiae FW100M-8 [CP035491]
488984
488911
-
Arg
ACG
-
¡û
>W2010402610
FUKR01000022
Actinomycetota
Mycetocola reblochoni REB411 [FUKR]
146466
146539
+
Arg
ACG
[ENA]
¡û
>W2011460944
RPFW01000006
Actinomycetota
Actinobacteria bacterium 15TR583 15Tr583 [RPFW]
433939
434016
+
Arg
ACG
[ENA]
¡û
>ENV09003670
ADGO01127524
Compost metagenome contig00001
168
93
-
Arg
ACG
[ENA]
¡û
>W2110395587
JADWYW010000069
Actinomycetota
Frankia sp. CNm7 [JADWYW]
52003
51930
-
Arg
ACG
[ENA]
¡û
>C211388725
CP081862
Actinomycetota
Cellulomonas sp. C5510 [CP081862]
3687365
3687292
-
Arg
ACG
-
¡û
>C231019640
AP025737
Actinomycetota
Herbiconiux sp. L3-i23 [AP025737]
103369
103442
+
Arg
ACG
-
¡û
>C231345770
CP094533
Actinomycetota
Agromyces soli KACC 16215 [CP094533]
537953
537878
-
Arg
ACG
-
¡û
>C241080679
CP043504
Actinomycetota
Protaetiibacter larvae KACC 19322 [CP043504]
423732
423657
-
Arg
ACG
-
¡û
>W2130024595
JADWYU010000133
Actinomycetota
Frankia sp. CN7 [JADWYU]
52069
51996
-
Arg
ACG
[ENA]
¡û
>C241306495
CP133018
Actinomycetota
Agromyces protaetiae W11 [CP133018]
538477
538550
+
Arg
ACG
-
¡û
>C11105105
CP002665
Actinomycetota
Cellulomonas gilvus ATCC 13127 [CP002665]
249767
249840
+
Arg
ACG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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